{"id":"W1841498532","doi":"10.1111/mmi.12289","title":"A deletion in the <scp><i>wapB</i></scp> promoter in many serotypes of <i>Pseudomonas aeruginosa</i> accounts for the lack of a terminal glucose residue in the core oligosaccharide and resistance to killing by <scp>R</scp>3‐pyocin","year":2013,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Biology; Pseudomonas aeruginosa; Random hexamer; Virulence; Operon; Bacteriocin; Oligosaccharide; Microbiology; Virulence factor; Lipid A; Plasmid; Sigma factor; Bacteria; Biochemistry; Genetics; RNA; Escherichia coli; Gene; RNA polymerase","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005848149,0.0001816309,0.0002440456,0.00005699695,0.00007005218,0.00003460529,0.000515039,0.0001306307,0.00001506876],"category_scores_gemma":[0.0001395862,0.0001133326,0.00006322219,0.0002944242,0.0002308977,0.0001032654,0.0001438495,0.0002459113,0.00001638999],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005826893,"about_ca_system_score_gemma":0.00001355826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001669619,"about_ca_topic_score_gemma":0.003943378,"domain_scores_codex":[0.9986006,0.0002126166,0.0004075821,0.0003380128,0.00006793415,0.0003732787],"domain_scores_gemma":[0.9989463,0.0005111307,0.0001732342,0.0003219718,0.00002288046,0.00002447354],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001389397,0.00009955258,0.002183466,0.00002805728,0.000008499993,0.000008496483,0.003206739,0.00003921631,0.9894486,0.00004584321,0.004651729,0.0002658759],"study_design_scores_gemma":[0.001440068,0.0003502844,0.1179968,0.0002665079,0.00005304487,0.0001918452,0.004189813,0.0001476365,0.8367367,0.001012304,0.03747465,0.000140335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966633,0.0004357194,0.0003569328,0.0008596483,0.00004596305,0.001362928,0.0000926766,0.000004004383,0.0001788408],"genre_scores_gemma":[0.9967374,0.00007940717,0.0007530224,0.00200069,0.00001091695,0.0002299833,0.00002713198,0.000014632,0.0001468631],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.152712,"threshold_uncertainty_score":0.462157,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01218582350075979,"score_gpt":0.2455904727532411,"score_spread":0.2334046492524813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}