{"id":"W1841800506","doi":"10.1371/journal.pgen.1005323","title":"Reproductive Mode and the Evolution of Genome Size and Structure in Caenorhabditis Nematodes","year":2015,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":142,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"USAF Phillips Laboratory; National Institute of General Medical Sciences; University of Oregon; University of Minnesota; Ellison Medical Foundation; National Institutes of Health; National Science Foundation","keywords":"Biology; Outcrossing; Genome; Genetics; Caenorhabditis; Selfing; Effective population size; Population; Evolutionary biology; Genome size; Comparative genomics; Autosome; Genome evolution; Genomics; Chromosome; Gene; Genetic variation; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001397694,0.000105871,0.0001493563,0.00002674271,0.00003003741,0.000009937571,0.00009174802,0.0001004158,0.000002025849],"category_scores_gemma":[0.0002254928,0.00008396624,0.00001965144,0.00007635317,0.0003146328,0.000002183361,0.0001249724,0.0000676258,3.100162e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002153841,"about_ca_system_score_gemma":0.00007715556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005040222,"about_ca_topic_score_gemma":0.0003493312,"domain_scores_codex":[0.9992229,0.00008438672,0.0001834885,0.0002661039,0.0001140391,0.0001290521],"domain_scores_gemma":[0.9994373,0.0000176437,0.00007469804,0.0002947972,0.0001161517,0.00005944856],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004679155,0.0001019361,0.03190198,0.00009618011,0.0001254673,0.000002070212,0.002463294,0.01509676,0.9465843,0.002630435,0.000132054,0.0003975652],"study_design_scores_gemma":[0.02424072,0.002350426,0.371897,0.0001347356,0.0005478953,0.0004740097,0.01106999,0.1962183,0.2797624,0.106802,0.004276803,0.002225713],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9895801,0.009242762,0.0004248563,0.0002034721,0.00004053535,0.0002202647,0.00004735224,0.000003745774,0.000236922],"genre_scores_gemma":[0.9977055,0.000585151,0.001420829,0.00004908372,0.00008680994,0.000006840455,0.00001821505,0.00001233367,0.0001152396],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6668219,"threshold_uncertainty_score":0.3424044,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006783051707632818,"score_gpt":0.2244731533148989,"score_spread":0.2176901016072661,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}