{"id":"W1842963151","doi":"10.1038/srep14567","title":"Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":1734,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada; Thompson Rivers University","funders":"Secretaría de Agricultura, Ganadería, Desarrollo Rural, Pesca y Alimentación; Product Board Animal Feed; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Javna Agencija za Raziskovalno Dejavnost RS; Agencia Nacional de Investigación e Innovación; New Zealand Government; Science Foundation Ireland; Ferdowsi University of Mashhad; Rural Development Administration; Alberta Livestock and Meat Agency; Instituto Nacional de Tecnología Agropecuaria; Australian Government; Rural and Environment Science and Analytical Services Division; Scottish Government; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Montana Agricultural Experiment Station; AgResearch","keywords":"Microbiome; Rumen; Host (biology); Composition (language); Metagenomics; Range (aeronautics); Microbial population biology; Biology; Bioinformatics; Ecology; Food science; Bacteria; Genetics; Fermentation; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004446851,0.0002500403,0.0004267768,0.0008705411,0.0003346785,0.0006823042,0.0000928934,0.0002562914,0.001397381],"category_scores_gemma":[0.0006003687,0.0001551168,0.0002657915,0.0007598487,0.0002972982,0.000411461,0.0005097288,0.0001499815,0.0004082324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001348806,"about_ca_system_score_gemma":0.0001063058,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001047987,"about_ca_topic_score_gemma":0.001779439,"domain_scores_codex":[0.9996301,0.0000806059,0.00004002306,0.0001292017,0.00006803939,0.00005201634],"domain_scores_gemma":[0.9996262,0.00007325551,0.0001351477,0.00003920341,0.00007529493,0.00005095958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006710328,0.00005755672,0.7124844,0.0002737407,0.000297704,0.0001148418,0.0006295959,0.00008983705,0.2563464,0.00007064098,0.0001822869,0.02878192],"study_design_scores_gemma":[0.000002794209,0.0001311598,0.9953403,0.0000145035,0.00004010626,0.0002013139,0.0002846322,0.00005926044,0.003217336,0.00004603773,0.0006576282,0.000004955119],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965541,0.001413118,0.0004202677,0.0000200545,0.000005367027,0.00001037003,0.0008154758,0.000008340917,0.0007529975],"genre_scores_gemma":[0.9973173,0.0006249439,0.0006996164,0.00004646521,0.000007377993,0.00001162871,0.0008622751,0.000004577838,0.0004258473],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001397381,"threshold_uncertainty_score":0.004674673,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0408611507510343,"score_gpt":0.2559952737405722,"score_spread":0.2151341229895379,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}