{"id":"W1844542617","doi":"10.1139/cjb-2012-0212","title":"Phylogeography based on intraspecific sequence variation in chloroplast DNA of<i>Miscanthus sinensis</i>(Poaceae), a native pioneer grass in Japan","year":2013,"lang":"en","type":"article","venue":"Botany","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Miscanthus sinensis; Phylogeography; Genetic structure; Chloroplast DNA; Gene flow; Intraspecific competition; Ecology; Miscanthus; Genetic variation; Introgression; Phylogenetic tree; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002046719,0.0001335658,0.0001608447,0.00007673661,0.00004739939,0.00003307541,0.00013639,0.0000713163,0.0002866902],"category_scores_gemma":[0.00003993862,0.00006128167,0.00005516317,0.0008980094,0.00007589629,0.0001127326,0.00002712748,0.0001091904,0.00002062704],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004938093,"about_ca_system_score_gemma":0.000006756532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001980558,"about_ca_topic_score_gemma":0.002678482,"domain_scores_codex":[0.9989042,0.00008262826,0.0002551356,0.0003321648,0.0002099587,0.0002159634],"domain_scores_gemma":[0.9996428,0.00006506145,0.0001013497,0.00007851037,0.00006526938,0.00004697964],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008406526,0.0006724439,0.02204099,0.000014129,0.00001637297,0.000005619332,0.0002728967,0.0005156798,0.93841,0.002617357,0.001196687,0.03415371],"study_design_scores_gemma":[0.0002594045,0.0001743102,0.9915367,0.00003552318,0.000003385815,6.132448e-7,0.0002811663,0.001112496,0.003785741,0.0003421399,0.002314781,0.0001537905],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994818,0.00002506334,0.00001387518,0.003517127,0.0001664285,0.0003108466,0.00001100415,0.00002968778,0.00110801],"genre_scores_gemma":[0.9992679,0.00003354876,0.0001004745,0.0003851784,0.00006678732,0.00005205971,0.00000888799,0.000001184041,0.00008397598],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9694957,"threshold_uncertainty_score":0.3139057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01378831325592278,"score_gpt":0.195936450957887,"score_spread":0.1821481377019642,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}