{"id":"W1844789377","doi":"10.1093/glycob/cwv095","title":"ArnT proteins that catalyze the glycosylation of lipopolysaccharide share common features with bacterial<i>N</i>-oligosaccharyltransferases","year":2015,"lang":"en","type":"article","venue":"Glycobiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Lipid A; Biochemistry; Periplasmic space; Aryl hydrocarbon receptor nuclear translocator; Bacterial outer membrane; Biology; Burkholderia cenocepacia; Transmembrane domain; Peptide sequence; Corynebacterium glutamicum; Protein structure; Chemistry; Amino acid; Genetics; Bacteria; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001961828,0.0002557753,0.0003150755,0.00005752654,0.00008124868,0.00002346153,0.0004654588,0.0004325638,0.00002904869],"category_scores_gemma":[0.00005090358,0.0001596134,0.00008086894,0.00009755541,0.0003659044,0.000005868867,0.000164435,0.0001714568,0.000007962368],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001400727,"about_ca_system_score_gemma":0.0001420914,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004758733,"about_ca_topic_score_gemma":0.00164604,"domain_scores_codex":[0.9987434,0.0001267314,0.0002670019,0.0004106945,0.0001147436,0.000337387],"domain_scores_gemma":[0.9989568,0.00002042414,0.0001762278,0.000621823,0.0001376667,0.00008708582],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009733101,0.00006610117,0.003781807,0.00001556417,0.00009138917,0.000003938652,0.00006981789,0.00001419161,0.9920993,0.0003610172,0.0007964374,0.001727157],"study_design_scores_gemma":[0.0008455684,0.001543978,0.00405211,0.00001766035,0.0000439575,0.000144351,0.00009821368,0.000002756595,0.9666018,0.0001722438,0.02624532,0.0002320124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965575,0.0006602785,0.0001947592,0.001136095,0.0003881328,0.0005376823,0.0002778011,0.00002872461,0.0002190258],"genre_scores_gemma":[0.9978752,0.0001514788,0.0003470131,0.0001806357,0.0003292305,0.00007039888,0.0009342079,0.00002781425,0.00008400924],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02549744,"threshold_uncertainty_score":0.6508847,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01589944541382127,"score_gpt":0.2275400080867342,"score_spread":0.2116405626729129,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}