{"id":"W1844957302","doi":"10.1111/jav.00814","title":"Speciation in mountain refugia: phylogeography and demographic history of the pine siskin and black‐capped siskin complex","year":2015,"lang":"en","type":"article","venue":"Journal of Avian Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Allopatric speciation; Phylogeography; Ecology; Population; Lineage (genetic); Introgression; Plumage; Refugium (fishkeeping); Glacial period; Zoology; Phylogenetic tree; Paleontology; Habitat","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002769448,0.00008041989,0.0001726407,0.0001340141,0.00001713263,0.000003530718,0.0001129748,0.0001482983,0.000007950917],"category_scores_gemma":[0.00005557201,0.00006006065,0.00006110361,0.0000969809,0.0002632629,0.00000375461,0.00006614827,0.0001063464,1.680716e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002031686,"about_ca_system_score_gemma":0.00005464958,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002991455,"about_ca_topic_score_gemma":0.00008853941,"domain_scores_codex":[0.9993227,0.0001520452,0.0002528707,0.0001083891,0.0000705788,0.00009347175],"domain_scores_gemma":[0.9994087,0.00001063734,0.0003102293,0.000102868,0.0001103196,0.00005720247],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001517172,0.00002844006,0.8853859,0.00001144146,0.00005034807,0.000001504946,0.000286646,0.0000637355,0.111364,0.0002170104,0.001493141,0.0009461325],"study_design_scores_gemma":[0.001158552,0.0003647672,0.9484342,0.00001108846,0.0000286265,0.00004566128,0.0001919473,0.00002212548,0.001089982,0.001122034,0.04744971,0.00008135197],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972056,0.0018901,0.0000665657,0.0004170156,0.000170802,0.00006144596,0.00001040869,7.531798e-7,0.0001773613],"genre_scores_gemma":[0.9989314,0.0002734902,0.0004481808,0.0001948926,0.00009267055,2.392512e-7,0.00001243392,0.000003554834,0.00004313033],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.110274,"threshold_uncertainty_score":0.2449202,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01963373926064104,"score_gpt":0.2309121569761452,"score_spread":0.2112784177155042,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}