{"id":"W1855521720","doi":"10.1128/genomea.00186-15","title":"Genome Sequence of an Alphabaculovirus Isolated from the Oak Looper, <i>Lambdina fiscellaria,</i> Contains a Putative 2-Kilobase-Pair Transposable Element Encoding a Transposase and a FLYWCH Domain-Containing Protein","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Transposase; Transposable element; Biology; Insertion sequence; Genetics; Transposition (logic); Genome; Whole genome sequencing; Sequence (biology); Gene; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00110623,0.0003483479,0.0004530755,0.00002645668,0.0004977288,0.0001222175,0.000569428,0.0001212614,0.00007278899],"category_scores_gemma":[0.00005043234,0.000150366,0.00008804635,0.0004371068,0.000267716,0.0003378983,0.0001269116,0.00030009,0.00002147936],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000168294,"about_ca_system_score_gemma":0.00008818337,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00414389,"about_ca_topic_score_gemma":0.00233193,"domain_scores_codex":[0.9970494,0.0003960309,0.00051616,0.0006241057,0.000692294,0.0007220466],"domain_scores_gemma":[0.9989195,0.0001787161,0.0001947838,0.0001476769,0.0002581493,0.0003011895],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009011382,0.0001911247,0.001354181,0.00001614837,0.0001948571,0.0000689147,0.005091686,0.00003855681,0.9910937,0.00003182877,0.00004161875,0.0009762683],"study_design_scores_gemma":[0.02290652,0.03987065,0.06367349,0.001051998,0.0007933668,0.0001096753,0.09211344,0.003641076,0.06557832,0.008149114,0.696429,0.005683381],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9812472,0.001120548,0.00005238741,0.001293773,0.00004256628,0.001524461,0.01441974,0.00005439655,0.0002449554],"genre_scores_gemma":[0.9951731,0.0001886152,0.0004758631,0.0006046867,0.0001063041,0.0001756859,0.003124286,0.000004660953,0.0001468047],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9255154,"threshold_uncertainty_score":0.626435,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06400772799864544,"score_gpt":0.2692655892017723,"score_spread":0.2052578612031269,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}