{"id":"W1861797323","doi":"10.1186/1471-2164-15-1177","title":"CAGE-defined promoter regions of the genes implicated in Rett Syndrome","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genetics and Neurodevelopmental Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Child and Family Research Institute","funders":"RIKEN; Natural Sciences and Engineering Research Council of Canada; Novo Nordisk; H. Lundbeck A/S; Lundbeckfonden; Ministry of Education, Culture, Sports, Science and Technology; Simons Foundation Autism Research Initiative; Genome British Columbia; EU Joint Programme – Neurodegenerative Disease Research","keywords":"Rett syndrome; Biology; Gene; Genetics; Cage; Promoter; DNA microarray; Computational biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001161404,0.0002512397,0.00021111,0.0003908437,0.0001561349,0.0001696696,0.0001402233,0.0001994975,0.001635923],"category_scores_gemma":[0.0002524653,0.0001387818,0.0003850884,0.0002952036,0.0002008838,0.00007512431,0.0002265341,0.0002914884,0.0005596885],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002798981,"about_ca_system_score_gemma":0.0003084757,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001161806,"about_ca_topic_score_gemma":0.004189361,"domain_scores_codex":[0.9998688,0.000009028886,0.000007391502,0.00006366586,0.00003072224,0.00002037563],"domain_scores_gemma":[0.9997645,0.00007298433,0.00007875069,0.00002525482,0.00002362304,0.00003489419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002213854,0.00001379397,0.007657892,0.00009028614,0.00001541954,0.0002027227,0.00008710169,0.0002620434,0.9875745,0.0003587524,0.0001344082,0.003381713],"study_design_scores_gemma":[0.00005332951,0.0002445132,0.3177291,0.00007606525,0.0001164431,0.002247743,0.0001507635,0.003668132,0.6641526,0.000972516,0.01056288,0.00002584677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9745868,0.001448682,0.01456901,0.00006104522,0.00002764367,0.00005931382,0.006894398,0.0002364196,0.002116669],"genre_scores_gemma":[0.9691026,0.0002921241,0.01850756,0.00008377881,0.00001105118,0.0001004976,0.01010692,0.00008219224,0.001713246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001635923,"threshold_uncertainty_score":0.00547266,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01306239451318696,"score_gpt":0.2124843939452935,"score_spread":0.1994219994321065,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}