{"id":"W1869272742","doi":"10.1099/00221287-147-6-1451","title":"Identification of lipopolysaccharide O antigen synthesis genes required for attachment of the S-layer of Caulobacter crescentus The GenBank accession number for the NA1000 rsaADEF and gmd, per, wbqA, wbqR, wbqX and wbqZ sequences reported in this paper is AF06235.","year":2001,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"ORFS; Caulobacter crescentus; Transposable element; S-layer; Biology; Gene; Genetics; Mutant; Peptide sequence; Open reading frame","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004425209,0.0001406686,0.000239795,0.00002248522,0.0001882232,0.0000205613,0.0002926035,0.0001174228,0.001072584],"category_scores_gemma":[0.00005220056,0.00007467132,0.0001097289,0.0001016657,0.0005534341,0.0001529181,0.0001834675,0.00007408785,0.000003312316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004517034,"about_ca_system_score_gemma":0.00001727976,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002894036,"about_ca_topic_score_gemma":0.00117561,"domain_scores_codex":[0.9987454,0.0001070397,0.0005833269,0.0003080191,0.00004743363,0.0002087873],"domain_scores_gemma":[0.9987882,0.0002881976,0.0004923911,0.0003701606,0.00004057873,0.00002048916],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009517181,0.00006067315,0.03549667,0.00002465935,0.0000603966,2.767475e-7,0.0006518049,0.000006620711,0.9592309,0.00001121184,0.0007722914,0.003589354],"study_design_scores_gemma":[0.0002835016,0.00003819458,0.1500279,0.00004965204,0.000119886,0.00007667667,0.0003584028,0.00008031375,0.8332998,0.00006194411,0.01549569,0.0001080257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961894,0.0005874382,0.00007648361,0.001917797,0.0002076939,0.0007697187,0.0001905319,0.000004339269,0.00005662307],"genre_scores_gemma":[0.9975048,0.001450438,0.0001417003,0.000222406,0.00002183618,0.00007662538,0.000009587478,0.00001098972,0.0005615852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.125931,"threshold_uncertainty_score":0.9998406,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02347026682273588,"score_gpt":0.2937075437962048,"score_spread":0.2702372769734689,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}