{"id":"W1878789850","doi":"10.1186/s12864-015-1961-y","title":"Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Trent University; Wellcome Trust; Nottingham Trent University","keywords":"Cronobacter sakazakii; Outbreak; Cronobacter; Multilocus sequence typing; Whole genome sequencing; Biology; Neonatal intensive care unit; Neonatal meningitis; Typing; Genome; Microbiology; Genetics; Virology; Enterobacter; Genotype; Medicine; Pediatrics; Bacteria; Gene; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001061728,0.0001481909,0.0001530345,0.00005313615,0.00003745469,0.00002799662,0.0003538032,0.0001351092,0.00001023368],"category_scores_gemma":[0.00005897638,0.0001212698,0.0001040242,0.00008915288,0.00009934109,0.000006218236,0.0004051819,0.0001386946,0.00001100117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009810582,"about_ca_system_score_gemma":0.0002947047,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005688042,"about_ca_topic_score_gemma":0.006975641,"domain_scores_codex":[0.9990318,0.00009266031,0.0002438512,0.0002785547,0.0001011731,0.0002518923],"domain_scores_gemma":[0.9991243,0.000005911626,0.00009125207,0.0004753329,0.000221041,0.00008211459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001959177,0.00002049676,0.6564209,0.0000333147,0.00002754331,0.000001621001,0.002306847,0.0001580996,0.3398734,0.000007790487,0.0002033544,0.0007506888],"study_design_scores_gemma":[0.002013795,0.000350634,0.702464,0.00004044943,0.00002648344,0.00004734483,0.01551893,0.00004660877,0.2537204,0.00005794725,0.02537392,0.0003394519],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984578,0.0004784977,0.0001476899,0.00003019415,0.0002689636,0.0002712155,0.00006203816,0.000004565531,0.0002789597],"genre_scores_gemma":[0.9989949,0.00003141075,0.0001558536,0.00009644096,0.0001602175,0.00001753925,0.0001657948,0.00002474289,0.0003530362],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.086153,"threshold_uncertainty_score":0.4945239,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02748424032610104,"score_gpt":0.2741331779608381,"score_spread":0.2466489376347371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}