{"id":"W1878789850","doi":"10.1186/s12864-015-1961-y","title":"Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Trent University; Wellcome Trust; Nottingham Trent University","keywords":"Cronobacter sakazakii; Outbreak; Cronobacter; Multilocus sequence typing; Whole genome sequencing; Biology; Neonatal intensive care unit; Neonatal meningitis; Typing; Genome; Microbiology; Genetics; Virology; Enterobacter; Genotype; Medicine; Pediatrics; Bacteria; Gene; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005594133,0.0003881048,0.0003042244,0.001477514,0.0007561287,0.0007295103,0.0003893893,0.0005855787,0.0006101045],"category_scores_gemma":[0.001454066,0.0002003912,0.0003659386,0.001429835,0.000381589,0.0002116015,0.0004484524,0.0004187549,0.0001437422],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002563806,"about_ca_system_score_gemma":0.001187597,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.101327,"about_ca_topic_score_gemma":0.06863925,"domain_scores_codex":[0.9994331,0.0001229247,0.00004278345,0.0001486649,0.00009312959,0.0001593715],"domain_scores_gemma":[0.9989976,0.0001698662,0.0003067989,0.00004061711,0.000324653,0.0001605406],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004478336,0.0001077033,0.9523696,0.0001098993,0.0000767055,0.005592837,0.003260592,0.000683955,0.02216497,0.0001110624,0.0006662171,0.01440866],"study_design_scores_gemma":[0.000007514879,0.0002242537,0.9930325,0.00002419502,0.0000364392,0.001433162,0.001975624,0.0005225702,0.001294084,0.00001798989,0.001422314,0.000009436572],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998549,0.0002198431,0.0002700833,0.0001013652,0.000004965209,0.00003287994,0.0005110071,0.000008129002,0.0003025605],"genre_scores_gemma":[0.9963536,0.0003397583,0.001350172,0.0001511798,0.0000161499,0.00003430666,0.001470292,0.000006004363,0.0002784839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.101327,"threshold_uncertainty_score":0.2014744,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02748424032610104,"score_gpt":0.2741331779608381,"score_spread":0.2466489376347371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}