{"id":"W1881967296","doi":"10.1016/j.chom.2015.08.006","title":"Strain-Specific V3 and CD4 Binding Site Autologous HIV-1 Neutralizing Antibodies Select Neutralization-Resistant Viruses","year":2015,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal; McGill University","funders":"Center for AIDS Research, Duke University; National Institutes of Health; Los Alamos National Laboratory; National Institute of Allergy and Infectious Diseases; National Nuclear Security Administration; Bill and Melinda Gates Foundation; U.S. Department of Energy; Institute for Research in Biomedicine; U.S. Department of Veterans Affairs","keywords":"Neutralization; Biology; Virology; Heterologous; Antibody; Neutralizing antibody; Epitope; Virus; Immunology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002295397,0.0003317067,0.0003863531,0.0002244209,0.0004081969,0.0001121865,0.0002016095,0.0002258876,0.000158696],"category_scores_gemma":[0.00002320416,0.0002926194,0.0000864531,0.0002378516,0.0003655974,0.0001554978,0.0001365886,0.0002960553,0.003252944],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001077763,"about_ca_system_score_gemma":0.0001303767,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001331264,"about_ca_topic_score_gemma":0.00008618556,"domain_scores_codex":[0.998059,0.0002313378,0.0003320059,0.0005288512,0.0000586011,0.0007902246],"domain_scores_gemma":[0.9992123,0.0001273106,0.0001150074,0.0002996947,0.0001184923,0.0001271536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001644057,0.000161484,0.01777844,0.00004142754,0.0001092889,0.00009404792,0.001180117,0.000006401172,0.9503132,0.0001509918,0.02951266,0.0004875957],"study_design_scores_gemma":[0.003313182,0.0005049578,0.01951234,0.00007964386,0.00007822663,0.0001819255,0.0008906511,0.000002366193,0.5756388,0.00002307438,0.3992378,0.0005371271],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9738033,0.02301808,0.00008775361,0.000198408,0.0002534552,0.0003722479,0.0008935753,0.0002191218,0.001153997],"genre_scores_gemma":[0.9939704,0.001418407,0.0003318402,0.0001281202,0.00004134682,0.00001859543,0.00107662,0.00005748746,0.002957164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3746744,"threshold_uncertainty_score":0.9999526,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03465796947875172,"score_gpt":0.2701492503526003,"score_spread":0.2354912808738486,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}