{"id":"W1888072857","doi":"10.1186/s12864-015-1770-3","title":"Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Nuclear Receptors and Signaling","field":"Neuroscience","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Child and Family Research Institute; University of British Columbia; Canada's Michael Smith Genome Sciences Centre; Montreal Neurological Institute and Hospital","funders":"","keywords":"Neocortex; Biology; Transcription factor; Neurogenesis; Candidate gene; Gene; Genetics; Computational biology; DNA microarray; Gene expression profiling; Gene expression; Subfamily; Cell biology; Neuroscience","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002169669,0.0001059711,0.0002679009,0.0003459057,0.00005158814,0.00003152018,0.00009129542,0.00006737089,0.0000268431],"category_scores_gemma":[0.00004204968,0.0001026778,0.00005348525,0.000337358,0.0000411723,0.0001551835,0.00003813775,0.0000504265,0.000001877279],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006720272,"about_ca_system_score_gemma":0.00006755733,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005110726,"about_ca_topic_score_gemma":0.00008321618,"domain_scores_codex":[0.9989326,0.00005872579,0.0004268429,0.0002507059,0.0001979765,0.000133172],"domain_scores_gemma":[0.9995571,0.00003209072,0.0001952739,0.000112895,0.00003932443,0.00006336749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002001218,0.00006356632,0.0416641,0.00002516606,0.00001689364,3.439151e-7,0.003266461,0.00535889,0.9492239,0.000004180779,0.000003911734,0.0001724626],"study_design_scores_gemma":[0.0008346484,0.00005201829,0.02523576,0.00001788237,0.00004752681,5.622861e-7,0.0002672752,0.01017557,0.9631604,0.00001081561,0.0001041087,0.0000934685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929489,0.00005667841,0.006385879,0.000002183919,0.0002746002,0.0001760134,0.000132488,0.00001374265,0.00000947064],"genre_scores_gemma":[0.9949276,0.00005064901,0.004899753,0.000004072429,0.00002306576,0.00000426643,0.00005169206,0.00001272171,0.00002611017],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01642835,"threshold_uncertainty_score":0.4187078,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05228812782930564,"score_gpt":0.2487426820804206,"score_spread":0.1964545542511149,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}