{"id":"W1888072857","doi":"10.1186/s12864-015-1770-3","title":"Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Nuclear Receptors and Signaling","field":"Neuroscience","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Child and Family Research Institute; University of British Columbia; Canada's Michael Smith Genome Sciences Centre; Montreal Neurological Institute and Hospital","funders":"","keywords":"Neocortex; Biology; Transcription factor; Neurogenesis; Candidate gene; Gene; Genetics; Computational biology; DNA microarray; Gene expression profiling; Gene expression; Subfamily; Cell biology; Neuroscience","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002244581,0.0003530853,0.0003529087,0.0004401126,0.0001503274,0.0002386209,0.0002300303,0.0001477662,0.001081787],"category_scores_gemma":[0.0002433662,0.0001255286,0.0005229598,0.0003921535,0.0001441977,0.0001055257,0.000171013,0.0002778219,0.0003721551],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002211681,"about_ca_system_score_gemma":0.0003135429,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007839869,"about_ca_topic_score_gemma":0.00203904,"domain_scores_codex":[0.9998678,0.00001035553,0.000007833047,0.00005425982,0.00004044444,0.00001927278],"domain_scores_gemma":[0.9998392,0.00005524964,0.00004959645,0.00001116912,0.00002463233,0.00002009021],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003820342,0.0001084995,0.0469816,0.0001514321,0.00008206949,0.000143133,0.00003756301,0.006878522,0.9202269,0.0002291832,0.0002155395,0.02456347],"study_design_scores_gemma":[0.00006026402,0.0004998348,0.2977619,0.00001870297,0.0002490258,0.00058876,0.0001006914,0.1467598,0.5501317,0.0007199083,0.003069371,0.00004011108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9737642,0.0002733714,0.02340779,0.00002576952,0.000006179803,0.0000282677,0.001736824,0.0002830656,0.0004745347],"genre_scores_gemma":[0.9324992,0.0002626957,0.05860959,0.00004592957,0.000008336031,0.00009323834,0.007165575,0.00008042255,0.001235041],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001081787,"threshold_uncertainty_score":0.003618956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05228812782930564,"score_gpt":0.2487426820804206,"score_spread":0.1964545542511149,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}