{"id":"W1892358288","doi":"10.1074/mcp.m115.049726","title":"The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD)","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome Canada","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; National Institutes of Health","keywords":"Electron-transfer dissociation; Dissociation (chemistry); Ion; Chemistry; Proteome; Electron transfer; Mass spectrometry; Tandem mass spectrometry; Biochemistry; Photochemistry; Chromatography; Physical chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001219077,0.0009515392,0.0003916816,0.0006819437,0.0005072254,0.001271485,0.001327427,0.0009396681,0.002109288],"category_scores_gemma":[0.001041743,0.0003435431,0.0005385376,0.0004523083,0.0007821636,0.001402499,0.001918369,0.001740455,0.001429645],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004165811,"about_ca_system_score_gemma":0.0005406159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000426978,"about_ca_topic_score_gemma":0.0005006978,"domain_scores_codex":[0.9990286,0.0001108825,0.00004236741,0.000247829,0.0004902328,0.00008017243],"domain_scores_gemma":[0.9995282,0.0001289343,0.00006846782,0.0000803334,0.000135057,0.00005909776],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004764086,0.00009607913,0.001621727,0.0005131629,0.00007800131,0.0002335619,0.0002020344,0.0004099134,0.9439763,0.002493905,0.00444337,0.04545537],"study_design_scores_gemma":[0.00005922225,0.0002403858,0.002028018,0.0000429288,0.00003868269,0.001294653,0.00005317384,0.006673668,0.9427839,0.001291542,0.04541762,0.00007631371],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.425741,0.0135131,0.5193637,0.001835036,0.001336915,0.0005873781,0.004621329,0.01203336,0.02096821],"genre_scores_gemma":[0.5636333,0.007353526,0.4016057,0.002021202,0.0002550271,0.0007563383,0.008719788,0.001611931,0.01404319],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002109288,"threshold_uncertainty_score":0.007056296,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007703994731810242,"score_gpt":0.2362407898171124,"score_spread":0.2285367950853021,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}