{"id":"W1894407715","doi":"10.1099/ijs.0.000207","title":"Tatumella saanichensis sp. nov., isolated from a cystic fibrosis patient","year":2015,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Victoria General Hospital; Provincial Health Services Authority; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Biology; Whole genome sequencing; Genome; Sequence analysis; Genetics; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001972187,0.0001407607,0.0003178044,0.00007825426,0.00003673898,0.00001857952,0.0002217008,0.0001137983,0.000009420809],"category_scores_gemma":[0.0001993472,0.0001118523,0.0001051393,0.00003464407,0.00008917971,0.000002823137,0.0001502843,0.00007135612,0.00001184806],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004779622,"about_ca_system_score_gemma":0.0001013122,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003401964,"about_ca_topic_score_gemma":0.000007077009,"domain_scores_codex":[0.9988493,0.0001367407,0.0006056643,0.000171145,0.0001063409,0.0001307804],"domain_scores_gemma":[0.9986454,0.00006285492,0.0004323593,0.0001223517,0.0006468038,0.00009017691],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005503313,0.0001097437,0.004984361,0.0002065569,0.001299685,0.00003608222,0.0006077682,0.0003196207,0.9816185,0.00006465987,0.01007387,0.0001288774],"study_design_scores_gemma":[0.06083333,0.04029614,0.1186496,0.03364474,0.007191471,0.1225675,0.05369438,0.009147383,0.19643,0.03524941,0.311151,0.01114498],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9774723,0.01936148,0.001325086,0.0002730825,0.001212409,0.0001390773,0.0001362122,0.000001818027,0.00007853055],"genre_scores_gemma":[0.9965158,0.0002989247,0.002563876,0.0001957474,0.0002927193,0.000005041356,0.00005923536,0.00001037701,0.00005833914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7851884,"threshold_uncertainty_score":0.4561204,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01136667937817934,"score_gpt":0.2202981913101504,"score_spread":0.208931511931971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}