{"id":"W1899220380","doi":"10.1093/gbe/evv130","title":"Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae","year":2015,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Genetics; Gene; Evolutionary biology; GC-content; Chloroplast DNA; Horizontal gene transfer; Operon; Genome evolution","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003033056,0.000112818,0.0001180038,0.00003874338,0.0001277774,0.000006497,0.000197134,0.0001978588,0.000002203899],"category_scores_gemma":[0.00003915339,0.00007634218,0.00003932203,0.0001136712,0.0003582893,0.000007053768,0.0001714179,0.0001071112,0.000002794801],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004447567,"about_ca_system_score_gemma":0.00007757655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002781864,"about_ca_topic_score_gemma":0.0004196066,"domain_scores_codex":[0.999213,0.0001658152,0.0001396951,0.0002376686,0.00006076573,0.0001830755],"domain_scores_gemma":[0.9996178,0.00001308503,0.00008038813,0.0001984806,0.00004907195,0.00004117535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003217013,0.00007304295,0.611788,0.00003692114,0.00005036635,0.000001372803,0.0006490548,0.00004403687,0.3840738,0.00255777,0.00004459638,0.000359316],"study_design_scores_gemma":[0.0005350542,0.0003423259,0.993861,0.000003735448,0.00002264579,0.00003927364,0.0003906871,0.00006466878,0.0001885288,0.002917879,0.001529237,0.0001049948],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935186,0.005161905,0.0003905522,0.0002617121,0.0001206815,0.0002102712,0.00007568545,0.00000387325,0.0002567303],"genre_scores_gemma":[0.999476,0.0001463973,0.00004623801,0.00006306505,0.00008815566,0.000008809153,0.00006664554,0.000004369903,0.0001003512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3838853,"threshold_uncertainty_score":0.3113143,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009098498404826454,"score_gpt":0.2181931318963658,"score_spread":0.2090946334915394,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}