{"id":"W1899220380","doi":"10.1093/gbe/evv130","title":"Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae","year":2015,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Genetics; Gene; Evolutionary biology; GC-content; Chloroplast DNA; Horizontal gene transfer; Operon; Genome evolution","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001650873,0.0001529877,0.0002580822,0.000834144,0.0004066146,0.0005179341,0.0001933389,0.0003057127,0.0005074157],"category_scores_gemma":[0.0005692759,0.0001478662,0.0001878275,0.000946208,0.0002246189,0.0004261191,0.0003810982,0.0003220565,0.0001414428],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004480902,"about_ca_system_score_gemma":0.0002411509,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002208756,"about_ca_topic_score_gemma":0.00239459,"domain_scores_codex":[0.9998585,0.00001569227,0.000006991578,0.00005894749,0.00003302709,0.00002682938],"domain_scores_gemma":[0.9997129,0.00006464357,0.00009282832,0.00002361871,0.00005515454,0.00005083576],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005467265,0.00004228038,0.193224,0.0001462728,0.00007720671,0.0003802867,0.001362784,0.0009974041,0.77211,0.0004943294,0.0001112458,0.03050749],"study_design_scores_gemma":[0.000008186804,0.00007226134,0.9888776,0.00001070505,0.00002529775,0.0004429314,0.0003929459,0.001125092,0.006844057,0.0002122913,0.00197521,0.00001343617],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989636,0.0003901838,0.0001502407,0.00001914888,8.538183e-7,0.000001983584,0.0001365713,0.000006279708,0.0003312139],"genre_scores_gemma":[0.9980698,0.0003228282,0.0005519825,0.00002269645,0.000003488056,0.000007010503,0.0007534573,0.000007980236,0.0002607732],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002208756,"threshold_uncertainty_score":0.004391849,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009098498404826454,"score_gpt":0.2181931318963658,"score_spread":0.2090946334915394,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}