{"id":"W1900158587","doi":"10.1186/1471-2164-7-14","title":"BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species","year":2006,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Chlamydiae; Chlamydophila; Biology; Chlamydiaceae; Chlamydiales; Chlamydophila pneumoniae; Genome; Lineage (genetic); Chlamydia; Chlamydia trachomatis; Genetics; ORFS; Giant Virus; Obligate; Microbiology; Virology; Gene; Open reading frame; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001157476,0.0004335406,0.000753101,0.0004897832,0.000451904,0.00006396785,0.00066905,0.0004600407,0.00009606266],"category_scores_gemma":[0.0004013315,0.0003556992,0.0003135879,0.0005243534,0.0008756212,0.0001803255,0.0003725568,0.000574969,0.00002372299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001126783,"about_ca_system_score_gemma":0.0002182581,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002944898,"about_ca_topic_score_gemma":0.0009039568,"domain_scores_codex":[0.9973779,0.0002489301,0.0007452253,0.00076976,0.0001634019,0.0006948094],"domain_scores_gemma":[0.9970086,0.000926681,0.0005735409,0.0009432489,0.0004913845,0.00005658278],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000783523,0.0002750359,0.07754559,0.0002729048,0.0003332746,0.000001717262,0.0005462547,0.001150296,0.9116411,0.00415178,0.001677596,0.001620925],"study_design_scores_gemma":[0.001186599,0.0001982032,0.5464248,0.00006328627,0.0001026298,0.00003573386,0.0005687273,0.00001871488,0.4223877,0.0006457135,0.02803707,0.0003308365],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.972782,0.007515545,0.01397591,0.0004967166,0.0005396968,0.00360969,0.0005249546,0.00006459349,0.0004908635],"genre_scores_gemma":[0.9934785,0.0005201176,0.002817458,0.00005292518,0.0004538746,0.0003461828,0.0001267893,0.00008396785,0.002120161],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4892534,"threshold_uncertainty_score":0.9998895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03924998024600063,"score_gpt":0.2819132460007897,"score_spread":0.2426632657547891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}