{"id":"W1900158587","doi":"10.1186/1471-2164-7-14","title":"BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species","year":2006,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Chlamydiae; Chlamydophila; Biology; Chlamydiaceae; Chlamydiales; Chlamydophila pneumoniae; Genome; Lineage (genetic); Chlamydia; Chlamydia trachomatis; Genetics; ORFS; Giant Virus; Obligate; Microbiology; Virology; Gene; Open reading frame; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007171124,0.0008967368,0.000861847,0.002085377,0.0006895537,0.0005347002,0.0004873319,0.0005326995,0.003077288],"category_scores_gemma":[0.001315445,0.0002291197,0.0009325253,0.00278923,0.0002668427,0.0003245188,0.0004364879,0.0005721544,0.001426987],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003871422,"about_ca_system_score_gemma":0.000633975,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001352576,"about_ca_topic_score_gemma":0.001876191,"domain_scores_codex":[0.999467,0.00009156686,0.0000719259,0.0001583151,0.0001337146,0.00007750034],"domain_scores_gemma":[0.9993632,0.0002702169,0.0001168376,0.00004693229,0.0001331618,0.00006954126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001436719,0.0002931761,0.02366896,0.001682236,0.0002047757,0.001058191,0.0002948481,0.0007795267,0.9419044,0.000338467,0.001552545,0.02678622],"study_design_scores_gemma":[0.0002157086,0.002031743,0.3805332,0.0003188541,0.0008968127,0.007774828,0.001150317,0.01567132,0.5475048,0.0008826148,0.04292038,0.00009935316],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9319571,0.006057859,0.02010567,0.0004017947,0.0001317353,0.0004272651,0.03534748,0.0009435529,0.0046276],"genre_scores_gemma":[0.8226382,0.003122766,0.09015983,0.0004427326,0.00005005637,0.0005473951,0.07956842,0.000280269,0.003190455],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003077288,"threshold_uncertainty_score":0.01029462,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03924998024600063,"score_gpt":0.2819132460007897,"score_spread":0.2426632657547891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}