{"id":"W1900300654","doi":"10.1186/s12864-015-1861-1","title":"Transcriptome analysis of the white pine blister rust pathogen Cronartium ribicola: de novo assembly, expression profiling, and identification of candidate effectors","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"","keywords":"Biology; Transcriptome; Effector; Gene expression profiling; RNA-Seq; Wilt disease; Gene; cDNA library; Botany; Fungus; Genetics; Gene expression; Cell biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002706804,0.0004878599,0.000587554,0.0004054663,0.000346353,0.0006797661,0.0002343992,0.0002935821,0.0005768503],"category_scores_gemma":[0.0003235817,0.00021206,0.0006782441,0.0005577434,0.0001666977,0.0002603336,0.0003095041,0.0006477139,0.0004861258],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003323501,"about_ca_system_score_gemma":0.0004513962,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001096736,"about_ca_topic_score_gemma":0.0019768,"domain_scores_codex":[0.9998043,0.00001364554,0.00001263412,0.0000792724,0.0000604714,0.00002968012],"domain_scores_gemma":[0.9998166,0.00004319351,0.00004783201,0.00001746944,0.00004831404,0.00002670741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001503872,0.00003621443,0.002381952,0.0002128976,0.00002157122,0.0001455106,0.00009143403,0.0006788099,0.9906962,0.000104564,0.0001537886,0.005326681],"study_design_scores_gemma":[0.00004965095,0.0006417223,0.1562469,0.0001060659,0.0003426257,0.001013343,0.0005927592,0.03313162,0.784858,0.0008331046,0.02212045,0.00006366771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9464362,0.002332586,0.03104268,0.000198554,0.00006973219,0.0001524482,0.01722459,0.0005865718,0.001956753],"genre_scores_gemma":[0.8806347,0.002433552,0.06178837,0.0001932638,0.00007147426,0.0002081018,0.05102603,0.0003889278,0.003255646],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001096736,"threshold_uncertainty_score":0.002411425,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0145596433950433,"score_gpt":0.248922834476112,"score_spread":0.2343631910810687,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}