{"id":"W1900300654","doi":"10.1186/s12864-015-1861-1","title":"Transcriptome analysis of the white pine blister rust pathogen Cronartium ribicola: de novo assembly, expression profiling, and identification of candidate effectors","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"","keywords":"Biology; Transcriptome; Effector; Gene expression profiling; RNA-Seq; Wilt disease; Gene; cDNA library; Botany; Fungus; Genetics; Gene expression; Cell biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003032551,0.00009646099,0.0001795747,0.0000542399,0.00004573601,0.00001232458,0.0001243285,0.00007863975,0.000002477002],"category_scores_gemma":[0.00004650673,0.0000675101,0.000105952,0.0001389181,0.00006980095,0.000003347977,0.00009426071,0.00003504226,3.870963e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001689511,"about_ca_system_score_gemma":0.00007496775,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002207304,"about_ca_topic_score_gemma":0.000178346,"domain_scores_codex":[0.9992811,0.00007005756,0.0002483241,0.0001885739,0.00009100843,0.0001209567],"domain_scores_gemma":[0.9993938,0.000005898375,0.0001693811,0.0002796495,0.0001036764,0.0000476475],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006380564,0.00003097244,0.1956725,0.00003328919,0.00009684202,1.258111e-7,0.0003351652,0.0005272574,0.8031037,0.00000704742,0.00008766892,0.00004170196],"study_design_scores_gemma":[0.0004062832,0.00006705621,0.1476321,0.000009078012,0.0003943209,0.000001840444,0.0002502943,0.0003729757,0.8496049,0.000005122354,0.001160667,0.00009531098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962733,0.0009087643,0.002307686,0.00003112661,0.00008794992,0.0001866042,0.0001510427,0.000002700511,0.00005082148],"genre_scores_gemma":[0.999,0.00006555623,0.000534921,0.00001887617,0.00004384591,0.00001184591,0.00007753532,0.00001033052,0.0002370512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04804032,"threshold_uncertainty_score":0.2752982,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0145596433950433,"score_gpt":0.248922834476112,"score_spread":0.2343631910810687,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}