{"id":"W1902743965","doi":"10.1007/s00705-015-2609-6","title":"Taxonomic reassessment of N4-like viruses using comparative genomics and proteomics suggests a new subfamily - “Enquartavirinae”","year":2015,"lang":"en","type":"article","venue":"Archives of Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph; Public Health Agency of Canada; Université Laval; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Subfamily; GenBank; Genomics; Comparative genomics; Virology; Phylogenetic tree; Genetics; Genome; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006565842,0.0001205817,0.0002704443,0.00004952419,0.00003737347,0.000007640607,0.0001476887,0.0000418003,0.00006275139],"category_scores_gemma":[0.000007398101,0.0001183332,0.00004581789,0.00004306727,0.0005140917,0.0001094259,0.0002248061,0.00009982073,0.00001429797],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004571424,"about_ca_system_score_gemma":0.00005643608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003590687,"about_ca_topic_score_gemma":0.0007030832,"domain_scores_codex":[0.9992147,0.00008036386,0.0002723456,0.0002147929,0.00004638499,0.0001714303],"domain_scores_gemma":[0.9994126,0.00007084895,0.0002194001,0.0001782001,0.000004418914,0.0001145565],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000223928,0.00009991416,0.008734175,0.000006275115,0.00002977261,0.000001525865,0.001877286,0.0007475289,0.9866447,0.00008295879,0.0001682053,0.001383675],"study_design_scores_gemma":[0.002191164,0.001597447,0.8613558,0.00005009765,0.0001108292,0.000135166,0.001081138,0.004323527,0.1117288,0.001915221,0.01508485,0.000425892],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961078,0.00005943272,0.001932233,0.00004827633,0.00009035147,0.0002880268,0.00002352852,0.000007069874,0.001443325],"genre_scores_gemma":[0.9726001,0.00004415981,0.02715656,0.0000912984,0.00001929316,0.000005777694,0.000004230422,0.000008883477,0.00006971605],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8749159,"threshold_uncertainty_score":0.5428069,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07952033428402003,"score_gpt":0.3137064638608142,"score_spread":0.2341861295767942,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}