{"id":"W1904401119","doi":"10.1139/cjm-2013-0084","title":"Phenotype microarray screening of carbon sources used by<i>Vibrio cholerae</i>identifies genes regulated by the cAMP receptor protein","year":2013,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Vibrio cholerae; cAMP receptor protein; Microbiology; Biology; Mutant; Gene; Bacteria; Virulence; Phenotype; Catabolite repression; Microarray; Genetics; Promoter; Gene expression","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003562251,0.0002067717,0.000343029,0.0001073459,0.0001626526,0.00005851778,0.0005482064,0.0002149018,0.0001408455],"category_scores_gemma":[0.0001655497,0.0001515048,0.0001275844,0.0001165479,0.0006346108,0.0000103473,0.000071157,0.0002245062,0.000007424172],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004316682,"about_ca_system_score_gemma":0.000441505,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009579337,"about_ca_topic_score_gemma":0.006937942,"domain_scores_codex":[0.998443,0.0002791255,0.0004759622,0.0002369857,0.00006693333,0.0004979752],"domain_scores_gemma":[0.9986578,0.00002619302,0.0003911327,0.0002866954,0.0004077183,0.0002304144],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003960083,0.000009796036,0.001844689,0.0000140757,0.0002464064,0.000001768032,0.0002629768,0.000005196846,0.9510202,6.159673e-7,0.04593646,0.0006182241],"study_design_scores_gemma":[0.0004811399,0.0002648545,0.0005570709,0.00004576108,0.00001865171,0.00006089637,0.000396331,0.000001115138,0.9047452,0.000005619715,0.09326657,0.0001568267],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9847979,0.01288427,0.00003363824,0.001561772,0.0001943539,0.0003230509,0.000160575,0.000002723166,0.00004173723],"genre_scores_gemma":[0.9975045,0.0001383161,0.0002418234,0.0001380464,0.0001810516,0.00001298219,0.0001309868,0.00002978678,0.001622521],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04733011,"threshold_uncertainty_score":0.997016,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008289068457978367,"score_gpt":0.2057552109897518,"score_spread":0.1974661425317735,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}