{"id":"W1913533593","doi":"10.1016/j.anaerobe.2015.10.013","title":"Complete genome sequences and analysis of the Fusobacterium nucleatum subspecies animalis 7-1 bacteriophage ɸFunu1 and ɸFunu2","year":2015,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Fusobacterium nucleatum; Biology; Virulence; Genome; Bacteriophage; Microbiology; Phenotype; Bifidobacterium animalis; Genetics; Fusobacterium; Gene; Bacteria; Bacteroides; Lactobacillus; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001510715,0.0001415637,0.000252241,0.000067794,0.0001382655,0.00009316506,0.0002112484,0.00005033609,0.0009683084],"category_scores_gemma":[0.00001979736,0.0001028888,0.00008708055,0.0005398263,0.0004782442,0.0003247286,0.0003594925,0.00009465403,0.0000246705],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007287789,"about_ca_system_score_gemma":0.000009223751,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002228123,"about_ca_topic_score_gemma":0.002408482,"domain_scores_codex":[0.9991053,0.00006122453,0.0002183513,0.000271223,0.0001428687,0.0002009684],"domain_scores_gemma":[0.9994326,0.00002542864,0.0001324045,0.0002643812,0.00002148988,0.0001236466],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001605194,0.0000277633,0.04600514,0.000006115845,0.0001210104,0.000003801165,0.001414277,0.00001868251,0.9516855,0.00009201623,0.0003004007,0.0003092209],"study_design_scores_gemma":[0.0001239198,0.00005961676,0.9793324,0.000004949587,0.0002226277,0.00001554099,0.0003442872,0.0001008839,0.001245239,0.00002551579,0.01840197,0.0001230203],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965408,0.0001000441,0.00001508709,0.0004989036,0.0001193603,0.0001009368,0.0001713671,0.00001562104,0.002437856],"genre_scores_gemma":[0.9985397,0.00008255494,0.0003149468,0.000274961,0.00002143363,0.00000306127,0.00001968111,0.000009734129,0.0007339045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9504403,"threshold_uncertainty_score":0.9999449,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02122446755163862,"score_gpt":0.2214311952791605,"score_spread":0.2002067277275219,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}