{"id":"W1920595654","doi":"10.1111/j.1365-2958.2011.07937.x","title":"Exposing the third chromosome of <i>Burkholderia cepacia</i> complex strains as a virulence plasmid","year":2011,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":106,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Université de Montpellier","keywords":"Biology; Virulence; Plasmid; Replicon; Genetics; Microbiology; Transposable element; Transposon mutagenesis; Burkholderia; Mutant; Galleria mellonella; Burkholderia cepacia complex; Caenorhabditis elegans; Mutagenesis; Tn3 transposon; Gene; Operon; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001639934,0.0001897501,0.0002837119,0.00001054651,0.000179916,0.00001242785,0.0004912986,0.0001251027,0.0003742643],"category_scores_gemma":[0.00003600313,0.00006891189,0.0001283368,0.0001643276,0.0004327374,0.00003897878,0.0002155949,0.0001203324,0.00006519608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000127408,"about_ca_system_score_gemma":0.00001067615,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001514047,"about_ca_topic_score_gemma":0.0001325058,"domain_scores_codex":[0.998845,0.0001503185,0.0002747381,0.0003160464,0.0000539573,0.0003599165],"domain_scores_gemma":[0.9995552,0.0000731732,0.0001618254,0.0001161046,0.00005071341,0.00004299392],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002473635,0.00005579077,0.0002038221,0.000004152413,0.00004586128,0.00002496541,0.0003206357,2.001893e-7,0.9979584,0.0006085653,0.0002660805,0.0004868173],"study_design_scores_gemma":[0.0001528234,0.0003650919,0.01898974,0.00002174237,0.00002961572,0.000295051,0.0002910701,0.000001807572,0.9682936,0.0003004789,0.01103808,0.0002209057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956014,0.0002653555,0.00001222086,0.0003036216,0.0001347348,0.0002170919,0.0003584776,0.00004253168,0.003064535],"genre_scores_gemma":[0.9986053,0.00004360542,0.0003194912,0.0008519355,0.00003613635,0.00001372041,0.0001075006,0.000001600992,0.00002075195],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02966478,"threshold_uncertainty_score":0.4097932,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0354265261382266,"score_gpt":0.2039840703401558,"score_spread":0.1685575442019292,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}