{"id":"W1920628456","doi":"10.1186/1471-2164-8-51","title":"A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution","year":2007,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Marine Biosciences; Dalhousie University; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Vetenskapsrådet; Dalhousie University; Wellcome Trust; Canadian Institute for Advanced Research; Emory University; Alfred P. Sloan Foundation","keywords":"Biology; Genetics; Genome; Gene; Codon usage bias; Genome evolution; Lineage (genetic)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008317755,0.0002802326,0.0004236677,0.0002134185,0.0002217046,0.00002152554,0.0002953873,0.0003538374,0.00004135926],"category_scores_gemma":[0.0001320228,0.00024609,0.0001043228,0.0002457878,0.0005284134,0.00006553029,0.0001309234,0.0003795805,0.00003827604],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003754586,"about_ca_system_score_gemma":0.0002107678,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005392053,"about_ca_topic_score_gemma":0.01529634,"domain_scores_codex":[0.9979633,0.0002746837,0.0007042774,0.0004130818,0.00004975834,0.0005949102],"domain_scores_gemma":[0.9988539,0.0005674888,0.000164627,0.0002934505,0.00006321591,0.00005732713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001468472,0.00009277881,0.5903497,0.00001329285,0.00004658516,0.00000335755,0.0003228138,0.000829563,0.408074,0.00007348352,0.000004431894,0.00004322122],"study_design_scores_gemma":[0.001210724,0.0001049298,0.9574028,0.0000138945,0.00007089206,0.00003812971,0.00004681376,0.00008659813,0.04061311,0.00007997768,0.00006651303,0.0002656505],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949681,0.0005483557,0.003044171,0.0000111252,0.0003261405,0.0005419806,0.0004546275,0.00002609541,0.00007946473],"genre_scores_gemma":[0.9994588,0.000108253,0.0001372061,0.00005411672,0.00003268613,0.00001280841,0.000114819,0.0000350419,0.00004624063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3674608,"threshold_uncertainty_score":0.9999991,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01409006345196933,"score_gpt":0.225491989854805,"score_spread":0.2114019264028357,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}