{"id":"W1920628456","doi":"10.1186/1471-2164-8-51","title":"A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution","year":2007,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Marine Biosciences; Dalhousie University; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Vetenskapsrådet; Dalhousie University; Wellcome Trust; Canadian Institute for Advanced Research; Emory University; Alfred P. Sloan Foundation","keywords":"Biology; Genetics; Genome; Gene; Codon usage bias; Genome evolution; Lineage (genetic)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001066986,0.0001868791,0.0001688845,0.0006298844,0.0001525916,0.0001883138,0.0000798922,0.0001678824,0.0005147284],"category_scores_gemma":[0.0002696429,0.00008493301,0.0001974317,0.0005467426,0.0001789418,0.00008936135,0.00020321,0.0001528749,0.0001968779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000124731,"about_ca_system_score_gemma":0.0001792639,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000886026,"about_ca_topic_score_gemma":0.001258268,"domain_scores_codex":[0.9999331,0.000006467536,0.00000586726,0.00002473224,0.00001358673,0.00001621738],"domain_scores_gemma":[0.9998142,0.00004451367,0.00005598242,0.00001127842,0.00002371001,0.00005028057],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003023834,0.00003253837,0.07205968,0.0001364434,0.00003337454,0.0001715071,0.0002675083,0.000127551,0.9200555,0.00005394071,0.00005277637,0.006706701],"study_design_scores_gemma":[0.00001202277,0.0004247041,0.9762101,0.00001185,0.00005429727,0.0006303255,0.0002626723,0.0003645189,0.02087155,0.00005024226,0.001101648,0.000006075485],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987206,0.0001107724,0.0003231931,0.000008147817,7.732593e-7,0.00000555769,0.0006876895,0.000007499309,0.0001357061],"genre_scores_gemma":[0.9930314,0.0001911247,0.001773493,0.00002106923,0.000003236399,0.00001449618,0.004645393,0.000004873293,0.0003150151],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000886026,"threshold_uncertainty_score":0.001761734,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01409006345196933,"score_gpt":0.225491989854805,"score_spread":0.2114019264028357,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}