{"id":"W1921598196","doi":"10.3855/jidc.6683","title":"Presence of virulence genes and pathogenicity islands in extraintestinal pathogenic Escherichia coli isolates from Brazil","year":2015,"lang":"en","type":"article","venue":"The Journal of Infection in Developing Countries","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Fundação Araucária; Ciência sem Fronteiras; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Virulence; Biology; Microbiology; Phylogenetic tree; Plasmid; Gene; Pathogenicity island; Escherichia coli; Neonatal meningitis; Virology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002834244,0.0003722122,0.0002808031,0.001203366,0.0003247738,0.000364637,0.0002234982,0.0003280985,0.0007616985],"category_scores_gemma":[0.001309949,0.0002086504,0.0002399551,0.0008061635,0.0003481806,0.000166583,0.0004673951,0.0001909651,0.0001283012],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003565659,"about_ca_system_score_gemma":0.0004658046,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0162432,"about_ca_topic_score_gemma":0.01402581,"domain_scores_codex":[0.9996711,0.00004151635,0.00004667955,0.00007790488,0.00009146319,0.00007124743],"domain_scores_gemma":[0.9994901,0.00007823218,0.0001928843,0.00004271055,0.0001338224,0.00006223096],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002083229,0.00005803668,0.9337461,0.0002474351,0.00005345621,0.001300033,0.002040632,0.00006551691,0.05142203,0.00007389131,0.0001210311,0.01066353],"study_design_scores_gemma":[0.00001793309,0.0002559401,0.9836621,0.00007293931,0.00005185665,0.004306525,0.001646513,0.0001426333,0.007829657,0.00005749151,0.00194477,0.00001170067],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986244,0.0003630146,0.0001488022,0.00003351448,0.00000259824,0.00002313369,0.0002778362,0.000004461017,0.0005221274],"genre_scores_gemma":[0.9988016,0.0003308502,0.0003216499,0.00002734459,0.000003571837,0.00001447317,0.000362061,0.000002437738,0.0001360766],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0162432,"threshold_uncertainty_score":0.03229731,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0197031594846624,"score_gpt":0.2889002038723328,"score_spread":0.2691970443876704,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}