{"id":"W1922161996","doi":"10.1101/gr.192922.115","title":"The genome of the vervet (<i>Chlorocebus aethiops sabaeus</i>)","year":2015,"lang":"en","type":"article","venue":"Genome Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":134,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre","funders":"CHIST-ERA; National Human Genome Research Institute; National Institutes of Health; Genome Canada; Ministero dell’Istruzione, dell’Università e della Ricerca; Agence Nationale de Recherches sur le Sida et les Hépatites Virales; Wellcome Trust; National Center for Research Resources; National Institute of Neurological Disorders and Stroke; Medical Research Council; European Molecular Biology Laboratory","keywords":"Vervet monkey; Biology; Genome; Cercopithecus aethiops; African Green Monkey; Genetics; Zoology; Virology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001666082,0.00007509308,0.0000946433,0.000009239121,0.0006822127,0.00007588739,0.0008930389,0.00006319601,0.0001695932],"category_scores_gemma":[0.0003000486,0.00001931649,0.00008328526,0.0007761999,0.0002692536,0.00003363318,0.000443843,0.0002426101,0.0001579873],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004961023,"about_ca_system_score_gemma":0.00007967492,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003955114,"about_ca_topic_score_gemma":0.000903292,"domain_scores_codex":[0.9982036,0.0002979863,0.0001865221,0.0001885458,0.0007192624,0.0004040581],"domain_scores_gemma":[0.9988579,0.0004127412,0.00003423909,0.0001722695,0.000385109,0.0001377142],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006809072,0.0001552632,0.007061372,0.00001121547,0.00004421718,0.000002457123,0.001230542,0.0000760746,0.9698839,0.004105728,0.001774496,0.01558662],"study_design_scores_gemma":[0.0001713782,0.0002786054,0.5079007,0.000006318378,0.000005779364,0.000009782519,0.00118979,0.00002559746,0.002943436,0.009431871,0.477926,0.0001108337],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9809412,0.001519117,7.926719e-7,0.009492646,0.0001350194,0.0003039922,0.00005783924,0.00001435837,0.007535073],"genre_scores_gemma":[0.9967595,0.0001593267,0.00002067206,0.00004899808,0.0003242506,0.00002483144,0.00001104741,9.709626e-7,0.00265044],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9669405,"threshold_uncertainty_score":0.5247098,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1252677416621797,"score_gpt":0.3122349694537666,"score_spread":0.1869672277915869,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}