{"id":"W1922818364","doi":"10.1186/s12864-015-1849-x","title":"EST-based in silico identification and in vitro test of antimicrobial peptides in Brassica napus","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"National Key Research and Development Program of China; Special Fund for Agro-scientific Research in the Public Interest; Nanyang Normal University","keywords":"UniGene; Biology; Expressed sequence tag; cDNA library; In silico; Defensin; Genetics; Contig; Gene; Complementary DNA; Brassica; Computational biology; Botany; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000588907,0.000888341,0.0008250715,0.001127444,0.000344795,0.0005167668,0.0003478376,0.0004940204,0.001118698],"category_scores_gemma":[0.0006278438,0.0002574948,0.001016574,0.001327293,0.0002002671,0.0002668801,0.0004270247,0.000528356,0.0009769468],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005076748,"about_ca_system_score_gemma":0.0003702505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001675546,"about_ca_topic_score_gemma":0.001943416,"domain_scores_codex":[0.9995351,0.00007614619,0.00007194767,0.0001299476,0.0001307568,0.00005621279],"domain_scores_gemma":[0.9996855,0.0001127635,0.00006853938,0.00002914765,0.00006805388,0.00003601631],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003097342,0.00006918088,0.001336904,0.0002897303,0.00001934896,0.000114821,0.00004972264,0.00103783,0.9934261,0.00004723845,0.0001023597,0.003197193],"study_design_scores_gemma":[0.00009156291,0.001412574,0.02723304,0.00007332161,0.0003101521,0.0006396606,0.0002923863,0.01620564,0.9433188,0.0001989628,0.01016964,0.00005427582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9645403,0.003376328,0.01438283,0.0001604526,0.00004398493,0.0001875915,0.01519274,0.0004268656,0.001688901],"genre_scores_gemma":[0.8296032,0.003815149,0.06601163,0.0001885376,0.00004495306,0.0003686488,0.09545641,0.0001759287,0.004335471],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001675546,"threshold_uncertainty_score":0.003742397,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02004968529521854,"score_gpt":0.2321821957434367,"score_spread":0.2121325104482181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}