{"id":"W1935195623","doi":"10.1111/j.1751-7915.2010.00224.x","title":"Genomic tracing of epidemics and disease outbreaks","year":2010,"lang":"en","type":"article","venue":"Microbial Biotechnology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Multilocus sequence typing; Typing; Outbreak; Housekeeping gene; Computational biology; Genetics; Infectious disease (medical specialty); Restriction fragment length polymorphism; Genotype; Virology; Disease; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006779901,0.0001012991,0.0001367595,0.00005202872,0.00007061659,0.00001451043,0.0001519719,0.0002067079,0.0005875076],"category_scores_gemma":[0.00009059141,0.00009925856,0.00004504318,0.00008757183,0.0005039593,0.0001117988,0.0002490141,0.0003217124,0.00009433759],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000231681,"about_ca_system_score_gemma":0.000007649464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005450062,"about_ca_topic_score_gemma":0.000477643,"domain_scores_codex":[0.9993444,0.00001195056,0.0001911329,0.0002400079,0.0000236099,0.0001888744],"domain_scores_gemma":[0.9995588,0.00002624087,0.00008266472,0.0002422529,0.000003971757,0.00008607124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000155683,0.00003080254,0.003904974,0.000004377952,0.000004611546,0.000002689654,0.00003452038,0.000003675998,0.9866838,0.0002399835,0.0005611986,0.008513735],"study_design_scores_gemma":[0.0003218576,0.00004954922,0.171294,0.00001689795,0.00003381641,0.0001377337,0.00002715786,0.00008371779,0.7514709,0.0004178949,0.07588431,0.0002621255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972335,0.00001300221,0.000312878,0.001874015,0.0002138459,0.0001066844,0.00005236073,0.00005050853,0.0001431846],"genre_scores_gemma":[0.9956785,0.00003155851,0.003784169,0.0002441465,0.00002181761,0.00000216166,0.000006296058,0.00001103289,0.0002202544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.235213,"threshold_uncertainty_score":0.6432796,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005060852665777779,"score_gpt":0.2116218335180528,"score_spread":0.206560980852275,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}