{"id":"W1935810336","doi":"10.5376/cmb.2014.04.0001","title":"PlantSecKB: the Plant Secretome and Subcellular Proteome KnowledgeBase","year":2014,"lang":"en","type":"article","venue":"Computational Molecular Biology","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Proteome; Computational biology; Subcellular localization; Biology; Bioinformatics; Biochemistry; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001187315,0.0001406341,0.0001140052,0.00002639484,0.00009862005,0.00002039071,0.0001476568,0.0001426372,0.00001199275],"category_scores_gemma":[0.00008341423,0.000098189,0.00004535603,0.00005781343,0.0001746737,0.000002198656,0.0001148869,0.00008937789,0.000008916222],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004720667,"about_ca_system_score_gemma":0.00002327104,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002894577,"about_ca_topic_score_gemma":0.000001168555,"domain_scores_codex":[0.9991664,0.0001287821,0.000157523,0.000309577,0.00006648213,0.0001712741],"domain_scores_gemma":[0.9996209,0.00003078129,0.00006338648,0.0001525447,0.00006588318,0.00006656082],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005239658,0.00001190223,0.0007577166,0.00001368393,0.00003073986,0.000001674338,0.00001654821,0.0001365088,0.9833298,0.01432329,0.00007972575,0.001246026],"study_design_scores_gemma":[0.002513611,0.001361879,0.03022619,0.00004234054,0.00007407625,0.0005792263,0.00003286874,0.02954314,0.6906299,0.1968466,0.04687265,0.001277509],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8802987,0.0003278974,0.1183968,0.0004826485,0.00009909031,0.0001747524,0.00005230739,0.00001335023,0.0001544671],"genre_scores_gemma":[0.9960098,0.000009323432,0.0009570148,0.0007647669,0.0001817476,0.00002134585,0.002000828,0.00001214947,0.00004303719],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2926999,"threshold_uncertainty_score":0.4004031,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006134736165057712,"score_gpt":0.2217877901096197,"score_spread":0.215653053944562,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}