{"id":"W1937008768","doi":"10.1128/genomea.00766-15","title":"Draft Genome Sequences of Burkholderia contaminans, a Burkholderia cepacia Complex Species That Is Increasingly Recovered from Cystic Fibrosis Patients","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"International Development Research Centre","keywords":"Burkholderia cepacia complex; Burkholderia; Cystic fibrosis; Biology; Genome; Microbiology; Whole genome sequencing; Computational biology; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004494584,0.0005294039,0.00108676,0.0002957075,0.000178367,0.0001349655,0.0005439855,0.0001647036,0.001807191],"category_scores_gemma":[0.000448509,0.0004887629,0.00019978,0.00050971,0.000495066,0.0004806778,0.0003433921,0.0002384083,0.0002898892],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007261382,"about_ca_system_score_gemma":0.0004614494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001775905,"about_ca_topic_score_gemma":0.00005536266,"domain_scores_codex":[0.9952496,0.0001914208,0.0009031458,0.0008535908,0.001887161,0.0009150851],"domain_scores_gemma":[0.9968969,0.0001740754,0.0005199913,0.000891157,0.0008867089,0.0006311561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001731495,0.0005265419,0.0632291,0.0002226392,0.0003852333,0.00003876449,0.002895084,0.00001340853,0.928069,0.00001194744,0.002513522,0.0003632396],"study_design_scores_gemma":[0.01313616,0.005150895,0.6658018,0.0008069877,0.0005180251,0.00002451059,0.004334303,0.0001277248,0.02691156,0.001043321,0.2809629,0.001181866],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9836203,0.002027452,0.0004050119,0.0002439746,0.0003575329,0.00131229,0.009372261,0.00007875469,0.002582371],"genre_scores_gemma":[0.9817852,0.0002379491,0.009071731,0.0003869437,0.0002371705,0.00007321072,0.006708772,0.00006830075,0.001430708],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9011574,"threshold_uncertainty_score":0.9997564,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06958779452907805,"score_gpt":0.2956475813907788,"score_spread":0.2260597868617008,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}