{"id":"W1937551444","doi":"10.1002/0471142905.hg1111s65","title":"Digital Gene Expression by Tag Sequencing on the Illumina Genome Analyzer","year":2010,"lang":"en","type":"article","venue":"Current Protocols in Human Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Genome British Columbia; Michael Smith Health Research BC","keywords":"Illumina dye sequencing; DNA sequencing; Computational biology; Gene expression profiling; Biology; Genome; Reference genome; Cancer genome sequencing; Gene; Genetics; Deep sequencing; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002163893,0.001891806,0.00266559,0.002665261,0.001389981,0.001782367,0.001854241,0.0009565053,0.01673835],"category_scores_gemma":[0.001228574,0.001127329,0.001783747,0.003193694,0.0006534362,0.0008528169,0.001415193,0.002756733,0.02097688],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001044345,"about_ca_system_score_gemma":0.001308636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001828502,"about_ca_topic_score_gemma":0.004997258,"domain_scores_codex":[0.9967278,0.0005994567,0.0002533951,0.001078283,0.001078743,0.0002621893],"domain_scores_gemma":[0.9992011,0.0001269299,0.00007980742,0.0002539801,0.0002622235,0.00007600251],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003732222,0.0001247664,0.0004879745,0.0004956694,0.0001070982,0.00008167885,0.0001297871,0.0007628656,0.9316987,0.002433412,0.01397311,0.04933172],"study_design_scores_gemma":[0.000258775,0.0007118161,0.006167313,0.0001139806,0.0002967831,0.0004469078,0.00004805353,0.01801752,0.6550906,0.002711412,0.3159482,0.0001886071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02664089,0.001606354,0.8832701,0.0002758844,0.0004179129,0.002307796,0.03858947,0.01863096,0.02826054],"genre_scores_gemma":[0.01974525,0.001759057,0.8736316,0.0004859712,0.0001018193,0.004499094,0.06617136,0.004225996,0.02937984],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01673835,"threshold_uncertainty_score":0.0559954,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03499782857039972,"score_gpt":0.311458375983155,"score_spread":0.2764605474127552,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}