{"id":"W1937551444","doi":"10.1002/0471142905.hg1111s65","title":"Digital Gene Expression by Tag Sequencing on the Illumina Genome Analyzer","year":2010,"lang":"en","type":"article","venue":"Current Protocols in Human Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Genome British Columbia; Michael Smith Health Research BC","keywords":"Illumina dye sequencing; DNA sequencing; Computational biology; Gene expression profiling; Biology; Genome; Reference genome; Cancer genome sequencing; Gene; Genetics; Deep sequencing; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002263514,0.0002817561,0.0001854617,0.00005119216,0.0001856722,0.0001082485,0.0005418684,0.0001420121,0.00002798622],"category_scores_gemma":[0.00005857264,0.0002154509,0.00009969919,0.00009266784,0.0002058509,0.000001787488,0.0003215279,0.0003287919,0.00001090601],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002626456,"about_ca_system_score_gemma":0.00005914341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001179877,"about_ca_topic_score_gemma":0.00001166822,"domain_scores_codex":[0.9984787,0.00005089022,0.0003652635,0.0005197233,0.0002058038,0.0003795921],"domain_scores_gemma":[0.9989219,0.00001994865,0.0001413365,0.0007498537,0.00007800425,0.00008892273],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001809773,0.0001053577,0.008148438,0.00002002007,0.00001432182,9.517536e-7,0.0000954283,0.00008178999,0.9877976,0.00007241552,0.001083222,0.002562423],"study_design_scores_gemma":[0.0006084174,0.0003831383,0.004054665,0.00004605718,0.000008922493,0.000004222326,0.00008048008,0.00004326987,0.7985963,0.0004049523,0.195326,0.0004435193],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858446,0.0005047075,0.0001484247,0.00003912808,0.0001681893,0.01168088,0.00009272576,0.000006261303,0.00151516],"genre_scores_gemma":[0.9862111,0.00006870849,0.0002550432,0.0000732871,0.0004276225,0.01253487,0.00009720904,0.00004199742,0.0002902026],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1942428,"threshold_uncertainty_score":0.8785831,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03499782857039972,"score_gpt":0.311458375983155,"score_spread":0.2764605474127552,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}