{"id":"W1938034723","doi":"10.1038/35101614","title":"Complete genome sequence of Salmonella enterica serovar Typhimurium LT2","year":2001,"lang":"en","type":"article","venue":"Nature","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1881,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"National Institutes of Health; Danmarks Grundforskningsfond; National Research Foundation; Wellcome Trust","keywords":"Biology; Salmonella enterica; Microbiology; Serotype; Pathogenicity island; Virulence; Salmonella; Plasmid; Virology; Genomic island; Population; Genome; Salmonella typhi; Whole genome sequencing; Escherichia coli; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002734533,0.001344351,0.0009730806,0.001593194,0.0007591328,0.0007992743,0.0005401426,0.0008370134,0.005227718],"category_scores_gemma":[0.0004991264,0.0004636353,0.0008411867,0.002375551,0.0002902444,0.0003339129,0.0004567755,0.0009577601,0.005027164],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006484261,"about_ca_system_score_gemma":0.001982623,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01608634,"about_ca_topic_score_gemma":0.01606352,"domain_scores_codex":[0.9998206,0.00001867418,0.00001610633,0.00004932643,0.00005575144,0.00003952295],"domain_scores_gemma":[0.9995678,0.00005794196,0.00006312647,0.00004053026,0.0001332982,0.0001371699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003742403,0.0001786825,0.004344693,0.001459668,0.0001028368,0.0006428622,0.0003593824,0.0008701978,0.9653365,0.0003495096,0.01013712,0.01247609],"study_design_scores_gemma":[0.0009987921,0.002008285,0.4217107,0.0005546313,0.0009310117,0.002413324,0.001153352,0.002708443,0.1725278,0.0007566394,0.3939877,0.0002494123],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.3890479,0.004976667,0.01089958,0.0008278514,0.0004187078,0.0003460427,0.5821844,0.0009490801,0.01034972],"genre_scores_gemma":[0.1336744,0.001452088,0.007487708,0.0002720916,0.00007444416,0.0002204875,0.8478854,0.0003077643,0.008625535],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01608634,"threshold_uncertainty_score":0.0319854,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03800008961538082,"score_gpt":0.2634364974339473,"score_spread":0.2254364078185665,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}