{"id":"W1939244766","doi":"10.1111/j.1755-0998.2011.03041.x","title":"DNA barcoding of oomycetes with cytochrome <i>c</i> oxidase subunit I and internal transcribed spacer","year":2011,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":652,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; Agriculture and Agri-Food Canada","funders":"Natural Environment Research Council; Sight Research UK","keywords":"Oomycete; Biology; Internal transcribed spacer; DNA barcoding; Ribosomal DNA; GenBank; Cytochrome c oxidase subunit I; Ribosomal RNA; Phytophthora; DNA sequencing; Genetics; Evolutionary biology; Mitochondrial DNA; Phylogenetics; DNA; Botany; Pathogen; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001094412,0.0001227392,0.0002048184,0.00001858536,0.00008623151,0.0000142611,0.0001443181,0.00008320197,0.0001732251],"category_scores_gemma":[0.00001195946,0.0000463399,0.00005027495,0.0001169608,0.0002089495,0.00004112345,0.00003794599,0.00008351731,0.000002650421],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000452672,"about_ca_system_score_gemma":0.000003332561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007804858,"about_ca_topic_score_gemma":0.0006542373,"domain_scores_codex":[0.9992423,0.00007867579,0.0001402778,0.0002246733,0.00009146181,0.0002225939],"domain_scores_gemma":[0.9997072,0.000052491,0.0000801897,0.00004643638,0.00003520634,0.00007850162],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009682543,0.00004486223,0.03018859,0.00001082337,0.00003308968,0.0001691093,0.0002083489,5.970584e-7,0.968425,0.00009910282,0.00001070235,0.0007129859],"study_design_scores_gemma":[0.0003383557,0.0007695586,0.786527,0.00005352711,0.00004848592,0.0001893585,0.0004453883,0.00001176209,0.2093111,0.0001436211,0.001946017,0.0002157318],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966007,0.0003672757,0.00001108263,0.0001300936,0.00001401441,0.000107265,0.00003764686,0.00002261958,0.002709297],"genre_scores_gemma":[0.9993907,0.00002942305,0.0002659073,0.0001337149,0.00001684074,0.000007874089,0.000006864112,0.000001419329,0.0001473183],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7591138,"threshold_uncertainty_score":0.1896693,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01102407452748625,"score_gpt":0.1703175916326091,"score_spread":0.1592935171051229,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}