{"id":"W1943502548","doi":"10.1034/j.1600-0854.2003.40106.x","title":"SopD2 is a Novel Type III Secreted Effector of <i>Salmonella typhimurium</i> That Targets Late Endocytic Compartments Upon Delivery Into Host Cells","year":2003,"lang":"en","type":"article","venue":"Traffic","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":119,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"University of British Columbia","keywords":"Endosome; Biology; Effector; Cell biology; Secretion; Endocytic cycle; Vacuole; Intracellular parasite; Type three secretion system; Cytosol; Intracellular; Virulence; Endocytosis; Cytoplasm; Cell; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003004694,0.00028645,0.0005262627,0.00002396092,0.0001204777,0.00002020432,0.000277135,0.0001907114,0.0006288416],"category_scores_gemma":[0.00003418099,0.0001304668,0.0001782147,0.0003473243,0.00009380787,0.00007156761,0.00004746418,0.0001628297,0.0002477236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004325443,"about_ca_system_score_gemma":0.00001966302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001275297,"about_ca_topic_score_gemma":0.00008748301,"domain_scores_codex":[0.9982686,0.0002162184,0.0003744707,0.0004510149,0.0002042218,0.0004854821],"domain_scores_gemma":[0.998955,0.00045663,0.0002049836,0.0001290348,0.00008478541,0.0001695785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001920614,0.0002547892,0.005215931,0.00003124002,0.000079996,0.000008983474,0.00031783,0.0001844306,0.9911795,0.00003302318,0.001404981,0.001097202],"study_design_scores_gemma":[0.004722309,0.003021234,0.1671464,0.0001922901,0.0003401916,0.00006065483,0.0007536651,0.00313319,0.7697581,0.000290941,0.04866561,0.001915402],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976854,0.0008942242,0.000004190608,0.00008997777,0.0004670708,0.0003396663,0.0000475292,0.00008569649,0.0003862061],"genre_scores_gemma":[0.998872,0.0001758756,0.0001084328,0.0004880992,0.00007160987,0.00001035915,0.00008498987,0.000003891428,0.0001847463],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2214214,"threshold_uncertainty_score":0.6885374,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02874213919734352,"score_gpt":0.2326895055867471,"score_spread":0.2039473663894036,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}