{"id":"W1943744233","doi":"10.1139/gen-2013-0088","title":"Isolation and characterization of novel<i>Ty</i>1-<i>copia</i>-like retrotransposons from lily","year":2013,"lang":"en","type":"article","venue":"Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Retrotransposon; Biology; Lilium; Genome; Genetics; Phylogenetic tree; Lineage (genetic); Evolutionary biology; Botany; Gene; Transposable element","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002743606,0.00006871705,0.00009415578,0.000006711758,0.00007583003,0.00002852543,0.00007062667,0.00005567702,0.0008569025],"category_scores_gemma":[0.000005237026,0.00003068636,0.00002811551,0.0001300642,0.00002350273,0.0001055425,0.00002063328,0.00003388964,0.00002659017],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005720015,"about_ca_system_score_gemma":0.000003758873,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004888369,"about_ca_topic_score_gemma":0.0001182369,"domain_scores_codex":[0.9995027,0.00001418336,0.0001495621,0.0001529755,0.00007986923,0.0001007487],"domain_scores_gemma":[0.9997569,0.0000383721,0.00006651793,0.00003836982,0.00005027841,0.00004957076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000002765038,0.00003132729,0.00390771,0.000001930086,0.000005571223,7.212785e-8,0.0001501259,0.000001166055,0.9939007,0.00006297909,0.000001638379,0.001933992],"study_design_scores_gemma":[0.00009528869,0.00007624669,0.9934704,0.000007483517,0.000009380871,0.000001018727,0.00002573992,0.0001396611,0.003194761,0.0002320662,0.002668836,0.00007914726],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980825,0.00004881101,0.0001976177,0.0009445725,0.00007091342,0.0001800283,0.0002856565,0.00002159681,0.0001682739],"genre_scores_gemma":[0.9986007,0.00003627507,0.0005487945,0.0001602298,0.0001508358,0.00001433847,0.0003594459,6.801511e-7,0.0001286569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.990706,"threshold_uncertainty_score":0.938248,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01316313771118452,"score_gpt":0.1810530478568099,"score_spread":0.1678899101456254,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}