{"id":"W1945274382","doi":"10.1002/rcm.7069","title":"Enzymatic generation of peptides flanked by basic amino acids to obtain MS/MS spectra with 2× sequence coverage","year":2014,"lang":"en","type":"article","venue":"Rapid Communications in Mass Spectrometry","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Cure Brain Cancer Foundation","keywords":"Chemistry; Peptide; Amino acid; Peptide sequence; Electrospray ionization; Tandem mass spectrometry; Electron-transfer dissociation; Enzyme; N-terminus; Fragmentation (computing); Biochemistry; Stereochemistry; Mass spectrometry; Chromatography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009811677,0.0009395723,0.0003483191,0.0003419823,0.0002172424,0.0004868627,0.0004346351,0.0005840206,0.001567871],"category_scores_gemma":[0.0006693887,0.0002475723,0.0003807973,0.0003083457,0.0003993775,0.0004344833,0.0005020321,0.0007831196,0.002318059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001776548,"about_ca_system_score_gemma":0.0003667072,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006940618,"about_ca_topic_score_gemma":0.000135806,"domain_scores_codex":[0.9994538,0.0000904498,0.00005335414,0.0001713869,0.0001705991,0.00006038872],"domain_scores_gemma":[0.9993448,0.0001184883,0.0002290963,0.00008772043,0.0001145278,0.0001054503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005308429,0.00002653808,0.0002269194,0.00008395979,0.000004880181,0.00007392648,0.000009105387,0.00005379836,0.9977037,0.0001205344,0.00005405942,0.001589495],"study_design_scores_gemma":[0.00001710914,0.0002780319,0.00106808,0.00001132967,0.00001663717,0.0008339807,0.00001321572,0.0006444574,0.9929534,0.0001160718,0.004037449,0.00001011182],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.6676599,0.003032229,0.3188588,0.0005782584,0.0001757186,0.001424282,0.002105759,0.001355766,0.004809292],"genre_scores_gemma":[0.6769899,0.002900558,0.3092197,0.0004745098,0.000108829,0.0009009549,0.00481283,0.0003292634,0.004263376],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001567871,"threshold_uncertainty_score":0.00524503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03300758589016917,"score_gpt":0.2907838029935478,"score_spread":0.2577762171033786,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}