{"id":"W1950636151","doi":"10.1002/yea.3016","title":"Computational models reveal genotype–phenotype associations in <i>Saccharomyces cerevisiae</i>","year":2014,"lang":"en","type":"article","venue":"Yeast","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundação para a Ciência e a Tecnologia; Centro de Estudos Ambientais e Marinhos, Universidade de Aveiro; Institute of Genetics; Programa Operacional Temático Factores de Competitividade","keywords":"Biology; Microsatellite; Genetics; Allele; Saccharomyces cerevisiae; Phenotype; Genome; Genotype; Strain (injury); Phenotypic trait; Yeast; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001554756,0.0000661676,0.000114146,0.00001381225,0.0001001359,0.00003878119,0.00009268952,0.00004036669,0.0003841122],"category_scores_gemma":[0.00002410628,0.00003043672,0.00005304037,0.0002585667,0.00001574301,0.0001056588,0.00001643256,0.0000581448,0.000148063],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002337688,"about_ca_system_score_gemma":0.000004226216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001546524,"about_ca_topic_score_gemma":0.0004288004,"domain_scores_codex":[0.9993113,0.00009202753,0.0001650707,0.0001521988,0.0001543485,0.0001250697],"domain_scores_gemma":[0.9997379,0.00008467115,0.00005877162,0.0000265717,0.00004650678,0.00004563186],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0001377399,0.00120354,0.2085072,0.00003861662,0.0002158549,0.00001150345,0.002641534,0.2008304,0.1352671,0.1362808,0.01491305,0.2999527],"study_design_scores_gemma":[0.0003578485,0.00007501481,0.8997995,0.0000148168,0.00002517288,0.000001755611,0.0003076414,0.06624477,0.0001416131,0.02720337,0.005527798,0.0003006649],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894915,0.00002350523,0.0001230664,0.001656324,0.00004280429,0.00007167655,0.00004637973,0.00003677702,0.008507955],"genre_scores_gemma":[0.9982256,0.000004056479,0.0003492913,0.0006407087,0.0001011419,0.000003722147,0.0001922123,5.801658e-7,0.0004826605],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6912923,"threshold_uncertainty_score":0.4205759,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02575911376782918,"score_gpt":0.2279913373434068,"score_spread":0.2022322235755776,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}