{"id":"W1951064865","doi":"10.1111/j.1365-313x.2005.02534.x","title":"LORE1, an active low‐copy‐number TY3‐<i>gypsy</i> retrotransposon family in the model legume <i>Lotus japonicus</i>","year":2005,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"Japan Society for the Promotion of Science","keywords":"Retrotransposon; Biology; Genetics; Long terminal repeat; Lotus; Transposable element; Lotus japonicus; Mutant; Gene; Mutagenesis; Mendelian inheritance; Genome; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000489692,0.0001549602,0.0001443543,0.000008870016,0.0004997673,0.0001407549,0.0006270508,0.00008259925,0.0002463124],"category_scores_gemma":[0.00001106177,0.00004251232,0.0001054632,0.000219708,0.00005560058,0.0002646651,0.00002660758,0.0004978303,0.00008107287],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003737333,"about_ca_system_score_gemma":0.00002852085,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001154119,"about_ca_topic_score_gemma":0.002266554,"domain_scores_codex":[0.9986409,0.0002093661,0.0002663824,0.0001766017,0.0003469451,0.0003597917],"domain_scores_gemma":[0.9994974,0.000168466,0.0001056062,0.00008847601,0.00004116053,0.00009890686],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009439768,0.001618119,0.00727441,0.000008492462,0.00012266,0.0001162188,0.01500919,0.01715567,0.8626651,0.005106133,0.009658837,0.08032115],"study_design_scores_gemma":[0.004252546,0.002013904,0.6674348,0.0003921437,0.0003978919,0.00752898,0.01216378,0.09118033,0.02818259,0.05019798,0.1337205,0.002534583],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9849001,0.0001049795,0.00001970648,0.01124258,0.0001015324,0.0001632652,0.0002085232,0.00001853413,0.003240732],"genre_scores_gemma":[0.9966551,0.0002131538,0.0001004749,0.001997904,0.0008344412,0.00000929725,0.00004386142,0.000001470175,0.0001443162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8344826,"threshold_uncertainty_score":0.3843856,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02769587011008922,"score_gpt":0.2272530155579779,"score_spread":0.1995571454478887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}