{"id":"W1953121839","doi":"10.3934/biophy.2015.4.517","title":"Chromatin epigenomic domain folding: size matters","year":2015,"lang":"en","type":"article","venue":"AIMS Biophysics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Nautical Research Society","funders":"Engineering and Physical Sciences Research Council","keywords":"Epigenomics; Chromatin; Folding (DSP implementation); Epigenetics; Computational biology; Biology; Epigenesis; Gene; Genetics; Gene expression; DNA methylation; Engineering","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001617923,0.0002832235,0.0002001344,0.0002069366,0.0002344537,0.0003749759,0.0003330723,0.0004454139,0.001714388],"category_scores_gemma":[0.0005128447,0.0001760982,0.000238258,0.0001129182,0.0005846365,0.001103977,0.0002775762,0.0003270264,0.0001926227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002104275,"about_ca_system_score_gemma":0.0001239538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000335245,"about_ca_topic_score_gemma":0.0003673352,"domain_scores_codex":[0.9999483,0.00001026321,0.00000176577,0.00002129703,0.00001009343,0.000008227925],"domain_scores_gemma":[0.9997891,0.0001098003,0.0000374948,0.00002848787,0.00001304806,0.0000220941],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001728186,0.00008477713,0.006423448,0.0002907151,0.00005188865,0.000494252,0.0002284601,0.08492658,0.6830224,0.194346,0.0005711212,0.02938764],"study_design_scores_gemma":[0.00003447869,0.000387129,0.02173573,0.00006241642,0.0000850393,0.001150861,0.0002113575,0.4624747,0.2532736,0.2505217,0.00997883,0.00008409571],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8923362,0.003995446,0.09269859,0.001080817,0.00009839089,0.00002284908,0.0001111078,0.0001281904,0.009528445],"genre_scores_gemma":[0.9938245,0.001070952,0.003435163,0.00007209005,0.00003235482,0.00001254972,0.00004007777,0.00002957484,0.00148266],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001714388,"threshold_uncertainty_score":0.005735159,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008694505631317066,"score_gpt":0.2190696432366001,"score_spread":0.210375137605283,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}