{"id":"W1953121839","doi":"10.3934/biophy.2015.4.517","title":"Chromatin epigenomic domain folding: size matters","year":2015,"lang":"en","type":"article","venue":"AIMS Biophysics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Nautical Research Society","funders":"Engineering and Physical Sciences Research Council","keywords":"Epigenomics; Chromatin; Folding (DSP implementation); Epigenetics; Computational biology; Biology; Epigenesis; Gene; Genetics; Gene expression; DNA methylation; Engineering","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001472697,0.0002112397,0.0001757605,0.00001906174,0.00007061451,0.00004750142,0.0002997807,0.0001273333,0.00001093341],"category_scores_gemma":[0.00002356524,0.0002152882,0.0001127785,0.00008958062,0.00008105004,0.000004481994,0.0001762767,0.00007580077,0.0001377757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000483678,"about_ca_system_score_gemma":0.0001065962,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002770081,"about_ca_topic_score_gemma":0.00001023779,"domain_scores_codex":[0.998948,0.00003453602,0.0002225467,0.0003410437,0.0001360741,0.0003178206],"domain_scores_gemma":[0.9991582,0.00001184107,0.0001141481,0.0004879931,0.00006249441,0.0001653286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002569921,0.00006481329,0.0003867638,0.00001499363,0.000056444,0.000004760086,0.0001772821,0.0002083307,0.9897973,0.0007578199,0.007714492,0.0007913351],"study_design_scores_gemma":[0.005397321,0.001642483,0.004888714,0.00006375199,0.0001283019,0.0001084784,0.002062185,0.002185526,0.7406477,0.03659853,0.2036191,0.002657909],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955308,0.0001549875,0.001649257,0.0005434623,0.0003059871,0.0001550245,0.00003362105,0.00002638377,0.001600442],"genre_scores_gemma":[0.9904789,0.00003609117,0.007157531,0.001216524,0.0003884144,0.00001586718,0.0001228892,0.00005150751,0.000532227],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2491496,"threshold_uncertainty_score":0.8779197,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008694505631317066,"score_gpt":0.2190696432366001,"score_spread":0.210375137605283,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}