{"id":"W1959739852","doi":"10.1371/journal.pone.0128679","title":"Gene Expression Profiling of Shoot-Derived Calli from Adult Radiata Pine and Zygotic Embryo-Derived Embryonal Masses","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"Natural Resources Canada","keywords":"Biology; Somatic embryogenesis; Explant culture; Callus; Embryo; Meristem; Gene expression profiling; Gene expression; Botany; Zygote; Cell biology; Genetics; Gene; Shoot; Embryogenesis; In vitro","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001199955,0.000253509,0.0002987136,0.0003895901,0.0002283849,0.000427901,0.0001839625,0.0002091877,0.0004549048],"category_scores_gemma":[0.0001273002,0.0001200773,0.0002804515,0.0003974063,0.0001736779,0.0001426204,0.0001411248,0.0005216512,0.0003112668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002299218,"about_ca_system_score_gemma":0.0002179231,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001477228,"about_ca_topic_score_gemma":0.002749264,"domain_scores_codex":[0.9998504,0.000006849032,0.00000918326,0.00005216672,0.00005804763,0.0000233081],"domain_scores_gemma":[0.9998642,0.00002921225,0.00003418361,0.000009362817,0.00004041634,0.00002255149],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000184688,0.000003834087,0.0004245531,0.00002843564,0.000002240041,0.00002664556,0.0000314686,0.00001533422,0.9988349,0.00001260833,0.000009272429,0.0005921668],"study_design_scores_gemma":[0.000005363885,0.0001973176,0.1588024,0.00002907414,0.00007396243,0.0003905615,0.0002736333,0.0009377876,0.8349229,0.00005556249,0.004293257,0.00001818191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9825591,0.001972978,0.007365342,0.00005074564,0.00003497026,0.00007061351,0.004940852,0.0001561275,0.002849272],"genre_scores_gemma":[0.9696387,0.001752554,0.008762185,0.0001854484,0.00002804427,0.0001641949,0.01180154,0.0001072527,0.007559997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001477228,"threshold_uncertainty_score":0.002937257,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03868593503911614,"score_gpt":0.2291582641614553,"score_spread":0.1904723291223392,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}