{"id":"W1962023964","doi":"10.1073/pnas.1507071112","title":"Population genomics of <i>Mycobacterium tuberculosis</i> in the Inuit","year":2015,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":true,"ca_institutions":"Montreal Heart Institute; Ste. Anne's Hospital; Nunavik Regional Board of Health and Social Services; McGill University; Université de Montréal; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; McGill University Health Centre; Canada Research Chairs; Government of Canada; McGill University","keywords":"Tuberculosis; Mycobacterium tuberculosis; Outbreak; Strain (injury); Transmission (telecommunications); Genomics; Biology; Population; Genome; Population genomics; Incidence (geometry); Whole genome sequencing; Virology; Genetics; Environmental health; Medicine; Gene; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002726067,0.0002008808,0.0002616577,0.0006865308,0.001477844,0.000966676,0.0005993602,0.0003131062,0.0020072],"category_scores_gemma":[0.0006477411,0.0001066934,0.0001940651,0.001390001,0.0004436078,0.0001556674,0.0003699097,0.0003032364,0.0001626971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01097735,"about_ca_system_score_gemma":0.002421759,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.9669839,"about_ca_topic_score_gemma":0.9645322,"domain_scores_codex":[0.9997508,0.00003488419,0.000007526213,0.00008991806,0.00003025535,0.00008666713],"domain_scores_gemma":[0.9996917,0.00003187986,0.00005306776,0.00001465251,0.0001241642,0.00008450662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003711434,0.00007630135,0.9453283,0.00006925976,0.0002274506,0.0004627119,0.006686942,0.001283223,0.01789899,0.001089851,0.00179192,0.02471393],"study_design_scores_gemma":[0.000004681743,0.00002864558,0.9953541,0.00001466581,0.00002131335,0.00009600621,0.001781926,0.001044797,0.0001343238,0.00006546667,0.001442069,0.00001203092],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972789,0.0003130065,0.0002260702,0.0001362726,0.000004120172,0.00001408733,0.0007294076,0.00000863381,0.001289558],"genre_scores_gemma":[0.9986013,0.00009518192,0.00016084,0.00005497014,0.00000171908,0.000006159843,0.0003509755,0.000004744875,0.0007242374],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9669839,"threshold_uncertainty_score":0.07964671,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0803266861486638,"score_gpt":0.3612041695214744,"score_spread":0.2808774833728106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}