{"id":"W1962023964","doi":"10.1073/pnas.1507071112","title":"Population genomics of <i>Mycobacterium tuberculosis</i> in the Inuit","year":2015,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":true,"ca_institutions":"Montreal Heart Institute; Ste. Anne's Hospital; Nunavik Regional Board of Health and Social Services; McGill University; Université de Montréal; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; McGill University Health Centre; Canada Research Chairs; Government of Canada; McGill University","keywords":"Tuberculosis; Mycobacterium tuberculosis; Outbreak; Strain (injury); Transmission (telecommunications); Genomics; Biology; Population; Genome; Population genomics; Incidence (geometry); Whole genome sequencing; Virology; Genetics; Environmental health; Medicine; Gene; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003896955,0.00006064195,0.0002058675,0.0001696771,0.00004021196,0.000005827624,0.0004462887,0.0000779457,0.000004713344],"category_scores_gemma":[0.002227677,0.0000318196,0.00006480364,0.0006848562,0.0004791924,0.0001942818,0.00008500027,0.0001855216,9.395471e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000744081,"about_ca_system_score_gemma":0.000071387,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001128113,"about_ca_topic_score_gemma":0.00000143879,"domain_scores_codex":[0.9983608,0.00002328914,0.0003888678,0.000138864,0.0009414456,0.0001467255],"domain_scores_gemma":[0.9992299,0.0001752949,0.0002624809,0.00001086325,0.0002792023,0.0000422473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001376585,0.0001407686,0.6925949,0.000163204,0.00002624131,1.650056e-8,0.001720791,0.0001373051,0.2715349,0.02931644,0.003557191,0.0006706023],"study_design_scores_gemma":[0.0003098604,0.000130236,0.9398102,0.00007366261,0.0000149194,0.00002455341,0.0005470156,0.0008072897,0.02907295,0.02885399,0.0003143299,0.00004099309],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9800223,0.0001282328,1.12767e-7,0.016337,0.00001210008,0.0002076246,0.000009301206,0.00000288381,0.003280479],"genre_scores_gemma":[0.9984164,0.00005681749,0.0004869372,0.0009317473,0.00007421266,0.000007576893,4.405166e-7,0.000002329696,0.00002355165],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2472153,"threshold_uncertainty_score":0.2666898,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0803266861486638,"score_gpt":0.3612041695214744,"score_spread":0.2808774833728106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}