{"id":"W1963056106","doi":"10.1111/mmi.12540","title":"A general protein <scp><i>O</i></scp>‐glycosylation system within the <scp><i>B</i></scp><i>urkholderia cepacia</i> complex is involved in motility and virulence","year":2014,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Glycomics Centre; University of British Columbia; University of Alberta","funders":"National Health and Medical Research Council; Medical Research Council; Directorate for Biological Sciences; University of Alberta","keywords":"Burkholderia cenocepacia; Biology; Virulence; Glycosylation; Microbiology; Burkholderia cepacia complex; N-linked glycosylation; Escherichia coli; Campylobacter jejuni; Glycan; Biochemistry; Glycoprotein; Biofilm; Burkholderia; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007919891,0.0005068828,0.0005232891,0.0001235812,0.0001875808,0.00008005885,0.0006268711,0.0009287909,0.000003208123],"category_scores_gemma":[0.000410872,0.0004230008,0.0001439811,0.0002829173,0.0005982551,0.000006859168,0.0005530808,0.0003941015,0.00002123091],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004520905,"about_ca_system_score_gemma":0.00008763549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001332563,"about_ca_topic_score_gemma":0.0002521322,"domain_scores_codex":[0.9967114,0.0006657958,0.0006626847,0.001112491,0.0001078265,0.0007397539],"domain_scores_gemma":[0.9983599,0.00006819476,0.0003641222,0.0009377255,0.0001432337,0.0001268287],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001395336,0.00006631922,0.001806339,0.00007625835,0.00006190933,0.00000765604,0.0001585987,0.00003781395,0.9961189,0.0007533724,0.0006870754,0.000211811],"study_design_scores_gemma":[0.001059452,0.0004906507,0.003212795,0.00004261993,0.00003428855,0.0001117247,0.0002047348,0.0008249772,0.938574,0.0002491276,0.05507224,0.0001234389],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952211,0.0008998971,0.001688888,0.000257275,0.0002626234,0.001046066,0.000118342,0.00006081498,0.0004449599],"genre_scores_gemma":[0.9956756,0.00005188484,0.001921013,0.001479916,0.0001622097,0.0001224841,0.0003227101,0.00005911017,0.0002051323],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05754494,"threshold_uncertainty_score":0.9998222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007990617256992037,"score_gpt":0.201148337100808,"score_spread":0.1931577198438159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}