{"id":"W1963713243","doi":"10.1089/cmb.2010.0099","title":"Natural Parameter Values for Generalized Gene Adjacency","year":2010,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Genome; Adjacency list; Value (mathematics); Probabilistic logic; Gene; Natural (archaeology); Class (philosophy); Biology; Expected value; Computational biology; Genetics; Computer science; Mathematics; Combinatorics; Artificial intelligence; Statistics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005487307,0.0006041633,0.0007988457,0.002648349,0.001278052,0.002210613,0.001635766,0.002599502,0.004506266],"category_scores_gemma":[0.07248765,0.0005513419,0.0006452374,0.00106591,0.003655988,0.005760673,0.002236919,0.002279848,0.0004235881],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001116361,"about_ca_system_score_gemma":0.0006352911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004262755,"about_ca_topic_score_gemma":0.0006964875,"domain_scores_codex":[0.9975574,0.001317465,0.00009848677,0.0004931492,0.0003448381,0.0001886275],"domain_scores_gemma":[0.9427756,0.04870445,0.002921153,0.002492934,0.001396533,0.001709259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0002916556,0.0001463068,0.006921796,0.0003127181,0.00007555357,0.0003178362,0.0005680191,0.1797997,0.006405469,0.7835379,0.003587393,0.01803562],"study_design_scores_gemma":[0.00007333427,0.00007379858,0.001721676,0.00007111775,0.00002196842,0.0004295179,0.0002080712,0.2171486,0.001228455,0.7776109,0.001315368,0.00009733325],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.543058,0.0008049115,0.4294766,0.002795281,0.00008660273,0.000200308,0.0005339789,0.0008023418,0.02224199],"genre_scores_gemma":[0.9480926,0.0002411347,0.0499355,0.00024408,0.00005340833,0.0003543173,0.0002475731,0.0001473886,0.0006838972],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005487307,"threshold_uncertainty_score":0.02902001,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0107817841428652,"score_gpt":0.287968404710122,"score_spread":0.2771866205672568,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}