{"id":"W1963781467","doi":"10.1016/j.virusres.2014.07.011","title":"Human APOBEC3F incorporation into human immunodeficiency virus type 1 particles","year":2014,"lang":"en","type":"article","venue":"Virus Research","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":false,"ca_institutions":"Royal Victoria Hospital; McGill University Health Centre; Royal Victoria Regional Health Centre; Jewish General Hospital","funders":"National Key Research and Development Program of China","keywords":"APOBEC3G; Cytidine deaminase; Biology; Linker; Zinc finger; Function (biology); Cytidine; Integrase; Peptide sequence; Sequence (biology); Mechanism (biology); Amino acid; Cell biology; Virology; Computational biology; Human immunodeficiency virus (HIV); Genetics; Biochemistry; DNA; Enzyme; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.002039839,0.0001755246,0.0002355199,0.0003712369,0.001647133,0.00009476025,0.0004862474,0.000208713,0.001689043],"category_scores_gemma":[0.0003102336,0.0001459675,0.00006867605,0.0005938426,0.0006876744,0.0001467049,0.0002964786,0.0006703693,0.01903785],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001666159,"about_ca_system_score_gemma":0.0001247621,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006415267,"about_ca_topic_score_gemma":0.003114227,"domain_scores_codex":[0.9968674,0.001218333,0.0003244572,0.0004605836,0.0002531433,0.0008760421],"domain_scores_gemma":[0.9986638,0.0001778291,0.00006011474,0.0006561583,0.0003593495,0.00008270827],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009357199,0.0004729629,0.002455792,0.00001636934,0.00006593343,0.000008821904,0.0004456299,0.000003187717,0.9644578,0.007822651,0.005424913,0.0187324],"study_design_scores_gemma":[0.00236565,0.003168045,0.0305515,0.00003804455,0.00001895172,0.00001300808,0.0002765157,0.00002285558,0.788664,0.01258612,0.161935,0.0003603343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885981,0.001362317,0.00004572601,0.0002303736,0.0001250565,0.0003976929,0.0000182895,0.00009908844,0.009123376],"genre_scores_gemma":[0.9945782,0.0000710442,0.00005731796,0.00003157186,0.00005667732,0.00009335191,0.0002687402,0.00002676831,0.004816349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1757937,"threshold_uncertainty_score":0.9996526,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08505218207473725,"score_gpt":0.3939540837215105,"score_spread":0.3089019016467733,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}