{"id":"W1964251403","doi":"10.1371/journal.pone.0042380","title":"Comparison of 6q25 Breast Cancer Hits from Asian and European Genome Wide Association Studies in the Breast Cancer Association Consortium (BCAC)","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Michael's Hospital; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; Public Health Ontario; University of Toronto; Cancer Care Ontario","funders":"Medical Research and Materiel Command; National Cancer Institute; Cancer Council Tasmania; Medical Research Council; University of California, Irvine; U.S. Army; National Institutes of Health; Alleanza Contro il Cancro; Cancer Research UK; Universität Ulm; Breast Cancer Research Trust; Rheinische Friedrich-Wilhelms-Universität Bonn; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; Agence Française de Sécurité Sanitaire de l'Environnement et du Travail; Fondazione Italiana per la Ricerca sul Cancro; Institut National Du Cancer; National Health and Medical Research Council; Oulun Yliopisto; Deutsche Krebshilfe; Medizinischen Hochschule Hannover; Norges Forskningsråd; Academia Sinica; Kuopion Yliopistollinen Sairaala; Deutsche Forschungsgemeinschaft; Deutsche Gesetzliche Unfallversicherung; Institute of Biomedical Sciences, Academia Sinica; Ministero della Salute; Agence Nationale de la Recherche; Bundesministerium für Bildung und Forschung; National Breast Cancer Foundation; Agency for Science, Technology and Research; Academy of Finland; King's College London; Wellcome Trust; Memorial Sloan-Kettering Cancer Center; Cancerfonden; Fondation de France; Breast Cancer Campaign; National Institute for Health and Care Research; Associazione Italiana per la Ricerca sul Cancro; Itä-Suomen Yliopisto; Lon V. Smith Foundation; KWF Kankerbestrijding; Herlev Hospital; U.S. Department of Health and Human Services; Mayo Clinic; Sundhed og Sygdom, Det Frie Forskningsråd; Centre International de Recherche sur le Cancer; Ligue Contre le Cancer; Deutsches Krebsforschungszentrum; Cancer Council Victoria; California Department of Public Health; Helsingin ja Uudenmaan Sairaanhoitopiiri; Susan G. Komen for the Cure; Taiwan Biobank; European Commission; Breast Cancer Research Foundation; Cancer Care Ontario","keywords":"Single-nucleotide polymorphism; Genome-wide association study; Breast cancer; Odds ratio; SNP; Oncology; Internal medicine; Estrogen receptor; Medicine; Genetic association; Genetics; Biology; Cancer; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01123647,0.0008704669,0.001512297,0.003888648,0.001241974,0.002231841,0.0009999308,0.001203352,0.006815351],"category_scores_gemma":[0.02070718,0.0003387942,0.002117737,0.005173066,0.0005927727,0.0006333466,0.001956422,0.0006418435,0.0007434071],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003494869,"about_ca_system_score_gemma":0.0004933945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009625317,"about_ca_topic_score_gemma":0.01365602,"domain_scores_codex":[0.9930155,0.002328078,0.001165906,0.002008056,0.0008663435,0.0006160844],"domain_scores_gemma":[0.9874046,0.005564085,0.002279623,0.001647998,0.002135437,0.0009682177],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00354022,0.00004145423,0.9710122,0.0004627966,0.006895643,0.001309933,0.0009643771,0.0003249644,0.003351517,0.0004597636,0.001848353,0.009788868],"study_design_scores_gemma":[0.0001783514,0.0001661206,0.9912488,0.00007990028,0.002642629,0.001312963,0.0006340537,0.0003060502,0.000268009,0.0003768106,0.002760295,0.00002594398],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9852722,0.006402284,0.001056064,0.000385816,0.00009587398,0.00004148686,0.004025129,0.00005305329,0.002668136],"genre_scores_gemma":[0.9919774,0.0009000271,0.0003588897,0.0002873632,0.00005928475,0.00004406703,0.005751679,0.00003791677,0.000583404],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01123647,"threshold_uncertainty_score":0.05942488,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05071927048535926,"score_gpt":0.3119722218509323,"score_spread":0.2612529513655731,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). 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