{"id":"W1964304738","doi":"10.1097/qad.0b013e32832995e0","title":"Multiple T-cell epitopes overlap positively-selected residues in the p1 spacer protein of HIV-1 gag","year":2009,"lang":"en","type":"article","venue":"AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service","keywords":"Epitope; Human immunodeficiency virus (HIV); Chemistry; Virology; Lentivirus; Group-specific antigen; Molecular biology; Biology; Antibody; Immunology; Viral disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001949178,0.0001097474,0.0001731776,0.00009127601,0.00007494879,0.000007862056,0.0001592636,0.0001027519,0.0001451386],"category_scores_gemma":[0.0001076769,0.00006998235,0.00005025944,0.0002355659,0.0001000837,0.00004851544,0.00002249177,0.0002122709,0.0004302144],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002502617,"about_ca_system_score_gemma":0.0000557932,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004683218,"about_ca_topic_score_gemma":0.0000999766,"domain_scores_codex":[0.9989452,0.0003742088,0.0001534572,0.0001700563,0.00004882828,0.0003081894],"domain_scores_gemma":[0.9995193,0.0001579642,0.00004500631,0.0002115263,0.00005210055,0.00001412735],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004037729,0.0007198892,0.08045351,0.000009784549,0.00006336364,0.00004371573,0.0009635802,0.000001225473,0.9081847,0.0004532161,0.003618633,0.005084585],"study_design_scores_gemma":[0.001897396,0.001213431,0.4612073,0.00002872763,0.00001153128,0.00001138984,0.0002481914,6.453027e-7,0.5317723,0.0001144817,0.003412604,0.00008198579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936612,0.001694947,0.00001616693,0.0006604096,0.00001904195,0.000495899,0.00006531474,0.00001918508,0.003367842],"genre_scores_gemma":[0.996311,0.00003962024,0.0002148146,0.00006764394,0.00001140125,0.00003524879,0.0001293102,0.000005524051,0.003185406],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3807538,"threshold_uncertainty_score":0.5529679,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00936352127785229,"score_gpt":0.2415675050355715,"score_spread":0.2322039837577192,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}