{"id":"W1964304738","doi":"10.1097/qad.0b013e32832995e0","title":"Multiple T-cell epitopes overlap positively-selected residues in the p1 spacer protein of HIV-1 gag","year":2009,"lang":"en","type":"article","venue":"AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service","keywords":"Epitope; Human immunodeficiency virus (HIV); Chemistry; Virology; Lentivirus; Group-specific antigen; Molecular biology; Biology; Antibody; Immunology; Viral disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001325554,0.0003030202,0.0001303913,0.0001543395,0.0001112728,0.0001847349,0.0001420503,0.000208207,0.001315421],"category_scores_gemma":[0.0003202858,0.00008737684,0.0001763364,0.00009418388,0.0001877666,0.0001320306,0.0001596305,0.0002785614,0.0003117815],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001495003,"about_ca_system_score_gemma":0.0001229057,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002093419,"about_ca_topic_score_gemma":0.0001875364,"domain_scores_codex":[0.9998842,0.00002507027,0.000007194079,0.00002848517,0.00002740396,0.00002758372],"domain_scores_gemma":[0.9998189,0.00006173902,0.00005347802,0.000009632889,0.00001624761,0.00004002489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006329336,0.00007568168,0.009299388,0.00004435853,0.00002120796,0.000508137,0.00004415648,0.0002853319,0.9856748,0.00008325104,0.00004055096,0.00329019],"study_design_scores_gemma":[0.0001842479,0.00291289,0.2316545,0.00003022023,0.0001251728,0.01180742,0.0002088605,0.006672197,0.7444958,0.0005233595,0.001366693,0.00001865129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994146,0.00007982013,0.0003011826,0.0000072106,0.000001625677,0.000003770333,0.00001489438,0.000003520945,0.000173298],"genre_scores_gemma":[0.9994959,0.0000329297,0.0002723479,0.00001123452,0.000003399816,0.000003599449,0.00005286346,0.000001959085,0.0001258125],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001315421,"threshold_uncertainty_score":0.004400492,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00936352127785229,"score_gpt":0.2415675050355715,"score_spread":0.2322039837577192,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}