{"id":"W1964335041","doi":"10.1093/nar/gkt265","title":"Exploring mRNA 3′-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":168,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Biology; Polyadenylation; Three prime untranslated region; Untranslated region; Messenger RNA; microRNA; Gene; RNA; Transcriptome; Genetics; Gene expression; Cell biology; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001164363,0.0001243957,0.0001749736,0.0002929915,0.0001196239,0.00008454849,0.0003276293,0.0000921597,0.00005141752],"category_scores_gemma":[0.000567889,0.0001149048,0.00004196763,0.0003084919,0.0002378423,0.00007594401,0.0003699792,0.0003512955,0.00001639251],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004565295,"about_ca_system_score_gemma":0.00008492871,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001467438,"about_ca_topic_score_gemma":0.0001464543,"domain_scores_codex":[0.9979489,0.0002497892,0.0002740968,0.0004064153,0.0005831197,0.0005376356],"domain_scores_gemma":[0.9990906,0.0001285714,0.00004901625,0.0003183082,0.0002542578,0.0001592146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001021542,0.00002765584,0.04448319,0.00004765119,0.00001941144,0.000005652644,0.0003725669,0.0000505128,0.9301659,0.00007945949,0.0001009281,0.02454491],"study_design_scores_gemma":[0.0009749565,0.001207938,0.2750975,0.0007270366,0.000005214532,0.00001472378,0.003661257,0.01628588,0.7008569,0.0004482627,0.0003654935,0.0003547674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99699,0.001710665,0.0001934674,0.000234368,0.00002266045,0.0003555827,0.000002076087,0.000006757295,0.000484372],"genre_scores_gemma":[0.9959992,0.002577353,0.0007151397,0.00001627257,0.0001275396,0.000101287,0.000005500046,0.00002381792,0.000433846],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2306144,"threshold_uncertainty_score":0.4685683,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1252648026633948,"score_gpt":0.3671743346525711,"score_spread":0.2419095319891763,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}