{"id":"W1964404276","doi":"10.1097/cji.0b013e318207ed14","title":"Identification of T-cell Epitopes by a Novel mRNA PCR-basedEpitope Chase Technique","year":2011,"lang":"en","type":"article","venue":"Journal of Immunotherapy","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Hôpital Notre-Dame","funders":"Canadian Institutes of Health Research","keywords":"Epitope; Messenger RNA; Molecular biology; Antigen; Polymerase chain reaction; Biology; CD8; T cell; Complementary DNA; Linear epitope; Virology; Computational biology; Gene; Immune system; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001343243,0.0002768255,0.0006079806,0.0003696287,0.0001416352,0.00001792712,0.0007187824,0.0003114289,0.000967163],"category_scores_gemma":[0.00006657594,0.0002271988,0.0003907644,0.0002476029,0.0003078666,0.0003247123,0.00002813602,0.0004779746,0.00005010295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005587492,"about_ca_system_score_gemma":0.0001797317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001126403,"about_ca_topic_score_gemma":7.598149e-7,"domain_scores_codex":[0.997574,0.0003205014,0.001491079,0.0001854406,0.0001064369,0.0003224846],"domain_scores_gemma":[0.9971775,0.0001595681,0.001771468,0.0004971779,0.0003713771,0.00002289684],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003702955,0.001400473,0.0001903273,0.00002384662,0.0004063889,0.000003968824,0.001433651,7.563009e-7,0.9789575,0.00008205143,0.001339947,0.01245815],"study_design_scores_gemma":[0.003851017,0.00122287,0.001452069,0.0001124365,0.00003596779,0.0002759919,0.0002633635,5.874978e-7,0.9586715,0.0001094433,0.03378075,0.0002240627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9099747,0.05987107,0.02781334,0.0001365975,0.001248613,0.0004801015,0.00006985926,0.00003692015,0.0003688005],"genre_scores_gemma":[0.9895112,0.006378381,0.001135468,0.0001894378,0.00003548555,0.00002364689,0.00001031578,0.00005338166,0.002662708],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07953648,"threshold_uncertainty_score":0.9999461,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01597080754654418,"score_gpt":0.2423509917837237,"score_spread":0.2263801842371795,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}