{"id":"W1964752634","doi":"10.1038/nrmicro2350","title":"Detecting genomic islands using bioinformatics approaches","year":2010,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":278,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University","funders":"Canadian Institutes of Health Research; University of British Columbia; Simon Fraser University; Michael Smith Health Research BC; Genome Canada","keywords":"Biology; Genome; Computational biology; Bacterial genome size; Horizontal gene transfer; Genomic information; Genomics; Data science; Evolutionary biology; Bioinformatics; Gene; Genetics; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007155656,0.0008314755,0.002346562,0.0001568213,0.0001953498,0.0000364178,0.0007175087,0.003087764,0.0000108032],"category_scores_gemma":[0.0001477515,0.0006091341,0.001017624,0.0001887257,0.0001706149,9.938387e-7,0.000563245,0.001657469,0.00005917209],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004904952,"about_ca_system_score_gemma":0.0002687687,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000147769,"about_ca_topic_score_gemma":0.00001942227,"domain_scores_codex":[0.9971768,0.0002917815,0.001150617,0.0007566644,0.00004001566,0.0005841798],"domain_scores_gemma":[0.9978877,0.00004798701,0.0009891938,0.0009269672,0.0000603015,0.00008783094],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000004404906,0.00002254512,0.0000138123,0.005880608,0.0002959566,0.000001482219,0.00003547117,8.35618e-7,0.02847425,0.00000903036,0.000685417,0.9645762],"study_design_scores_gemma":[0.0001247068,0.00006845848,8.042674e-7,0.0009566959,0.0005843543,0.0006911869,0.000008689686,0.000004808469,0.0002000421,0.000005480616,0.9967154,0.0006394209],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003824842,0.9964309,0.0001218812,0.000005154516,0.00105841,0.001254187,0.0001993441,0.00000724286,0.0005403467],"genre_scores_gemma":[0.00002862058,0.9866263,0.01108871,0.0001764639,0.00107776,0.00007258665,0.0006975771,0.00009633456,0.0001357037],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9960299,"threshold_uncertainty_score":0.999636,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05690742358800292,"score_gpt":0.306785912250677,"score_spread":0.2498784886626741,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}