{"id":"W1964877861","doi":"10.1073/pnas.1100958108","title":"Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions","year":2011,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Seed Germination and Physiology","field":"Agricultural and Biological Sciences","cited_by":242,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Biology; Germination; Arabidopsis; Abiotic stress; Seed dormancy; Dormancy; Abiotic component; Arabidopsis thaliana; Gene; Trait; Plant evolution; Function (biology); Genetics; Genome; Evolutionary biology; Botany; Mutant; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008525691,0.00009069753,0.000171551,0.00004972153,0.0002132538,0.000007415749,0.0004260091,0.0001028121,0.00005263307],"category_scores_gemma":[0.0001118201,0.0000399753,0.00008747034,0.00076111,0.0003798197,0.0002863849,0.00004310824,0.00009247103,6.311831e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001703937,"about_ca_system_score_gemma":0.00001113269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008532174,"about_ca_topic_score_gemma":2.901529e-7,"domain_scores_codex":[0.9987835,0.0000168573,0.0003995316,0.0001992092,0.0004516726,0.0001492001],"domain_scores_gemma":[0.9989733,0.0001123601,0.0005411759,0.000005284224,0.0003342926,0.00003363184],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003237604,0.00008344714,0.0009447739,0.00002093572,0.000007576128,3.68359e-9,0.0003662124,0.00082506,0.9861578,0.01128823,0.00007360023,0.0002000056],"study_design_scores_gemma":[0.0002172228,0.0001237866,0.4993032,0.00007158987,0.00002142779,0.000002541789,0.0002317138,0.0185983,0.3949176,0.08635588,0.00004147795,0.0001152302],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964758,0.00004978265,0.000008279401,0.0008173375,0.00001430412,0.0002090281,0.00007695878,0.00001346933,0.002335069],"genre_scores_gemma":[0.9991983,0.000008512667,0.0005028174,0.00009617639,0.00005690116,0.000008376474,0.000006108614,7.444791e-7,0.000122098],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5912402,"threshold_uncertainty_score":0.1640198,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05990491901813508,"score_gpt":0.2594810384025693,"score_spread":0.1995761193844342,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}