{"id":"W1964880353","doi":"10.1093/nar/gkv399","title":"Pathways with PathWhiz","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"Genome Alberta; Canadian Institutes of Health Research; Alberta Innovates; Genome Canada","keywords":"SBML; Biology; Computer science; Computational biology; DrugBank; Web server; The Internet; Markup language; World Wide Web; XML","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001127977,0.002031621,0.00124991,0.00318449,0.001305328,0.003317182,0.003231573,0.001401795,0.08652433],"category_scores_gemma":[0.00214796,0.00168667,0.001980456,0.003676379,0.0004735601,0.002966152,0.003112548,0.00250945,0.03955388],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001344864,"about_ca_system_score_gemma":0.002522287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003078743,"about_ca_topic_score_gemma":0.004226537,"domain_scores_codex":[0.999505,0.00006995865,0.00004264736,0.0001385812,0.0001709787,0.00007279074],"domain_scores_gemma":[0.9993993,0.0002057521,0.0000517338,0.000157758,0.0001180012,0.00006752323],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001765178,0.0002031561,0.00326842,0.006002323,0.0004839193,0.00117884,0.0006840477,0.008901768,0.02638438,0.04799681,0.7249573,0.1781739],"study_design_scores_gemma":[0.0003144051,0.00008207186,0.001560345,0.0003343834,0.0001693234,0.0007900625,0.0001187273,0.01481498,0.01936279,0.02040926,0.9419355,0.0001082311],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01045722,0.00300492,0.2674894,0.001069073,0.000779433,0.0005908933,0.1893962,0.4755419,0.05167092],"genre_scores_gemma":[0.06280264,0.006319263,0.3573158,0.0006405764,0.0001227112,0.001808987,0.4777219,0.06588327,0.02738476],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.08652433,"threshold_uncertainty_score":0.2894527,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05560748865350203,"score_gpt":0.3037519630372243,"score_spread":0.2481444743837223,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}