{"id":"W1965141776","doi":"10.3920/bm2012.0027","title":"Transcriptomic response of immune signalling pathways in intestinal epithelial cells exposed to lipopolysaccharides, Gram-negative bacteria or potentially probiotic microbes","year":2012,"lang":"en","type":"article","venue":"Beneficial Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lallemand (Canada); Armand Frappier Museum; Agropur cooperative","funders":"","keywords":"Biology; Immune system; Bacteria; Microbiology; Probiotic; Lipopolysaccharide; Microbiome; Transcriptome; Microarray; Gram-negative bacteria; Gram-positive bacteria; Pathogenic bacteria; Immunology; Gene expression; Escherichia coli; Gene; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007168097,0.000331364,0.0004763088,0.00009363118,0.0001504862,0.00007536324,0.0004645944,0.000186499,0.0002370509],"category_scores_gemma":[0.0001412236,0.0001594477,0.0001954876,0.0005473269,0.00009308517,0.000175072,0.0001276155,0.0002063085,0.00003428065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007783888,"about_ca_system_score_gemma":0.000063363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006880728,"about_ca_topic_score_gemma":0.001487663,"domain_scores_codex":[0.9977608,0.0002190713,0.0007761323,0.0003844685,0.0001540337,0.0007055083],"domain_scores_gemma":[0.9991068,0.0003124007,0.0002091553,0.00009499367,0.0001070926,0.0001695054],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003245639,0.000594683,0.0002198602,0.00003286502,0.00002287978,0.000005818498,0.001249669,0.00002162895,0.9893081,0.00008956992,0.00001540106,0.005193854],"study_design_scores_gemma":[0.0004260539,0.000976111,0.01635564,0.0002226759,0.00003071696,0.00001249661,0.000535642,0.000009364226,0.9806803,0.00009299071,0.0002985139,0.0003595274],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979025,0.0002356758,0.00009673391,0.0002236058,0.0004369314,0.0006697266,0.00037482,0.00004862295,0.00001143879],"genre_scores_gemma":[0.9969119,0.00004275334,0.002595847,0.0001133629,0.0002303227,0.00001553041,0.00003592572,0.000006764861,0.00004760092],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01613578,"threshold_uncertainty_score":0.6502087,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02630710544427483,"score_gpt":0.2193421415670177,"score_spread":0.1930350361227429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}