{"id":"W1965141776","doi":"10.3920/bm2012.0027","title":"Transcriptomic response of immune signalling pathways in intestinal epithelial cells exposed to lipopolysaccharides, Gram-negative bacteria or potentially probiotic microbes","year":2012,"lang":"en","type":"article","venue":"Beneficial Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lallemand (Canada); Armand Frappier Museum; Agropur cooperative","funders":"","keywords":"Biology; Immune system; Bacteria; Microbiology; Probiotic; Lipopolysaccharide; Microbiome; Transcriptome; Microarray; Gram-negative bacteria; Gram-positive bacteria; Pathogenic bacteria; Immunology; Gene expression; Escherichia coli; Gene; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001723218,0.0002384837,0.0004184425,0.000269737,0.0002179163,0.0003274816,0.00008621233,0.0002952261,0.001552355],"category_scores_gemma":[0.0002313403,0.0001345226,0.0003279718,0.0003448491,0.0001804836,0.0001888706,0.0001933477,0.0003865139,0.0003133116],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001632364,"about_ca_system_score_gemma":0.0001684018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003320448,"about_ca_topic_score_gemma":0.0004975726,"domain_scores_codex":[0.9998162,0.00003484651,0.00001275766,0.00005181311,0.00004411595,0.00004027712],"domain_scores_gemma":[0.9998878,0.00003941317,0.00002173913,0.000008635066,0.00002488613,0.00001751367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001432749,0.00001030827,0.0005554782,0.00003597813,0.000005502129,0.00001505129,0.00001681886,0.00003671668,0.9986725,0.000008430321,0.00001260177,0.0004874819],"study_design_scores_gemma":[0.00003148506,0.000738049,0.1509193,0.00002936903,0.0001159399,0.0003583346,0.0004131442,0.00259752,0.8425503,0.0001644693,0.002054489,0.0000276428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926556,0.001262674,0.002927234,0.000121689,0.00003984131,0.0000418062,0.002381764,0.00002572841,0.0005434545],"genre_scores_gemma":[0.9816585,0.001665943,0.007347571,0.0002952668,0.00003615582,0.000286154,0.005571052,0.00002106287,0.003118334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001552355,"threshold_uncertainty_score":0.005193114,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02630710544427483,"score_gpt":0.2193421415670177,"score_spread":0.1930350361227429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}